Hb_000656_380

Information

Type -
Description -
Location Contig656: 344401-352858
Sequence    

Annotation

kegg
ID rcu:RCOM_0651980
description Exportin-T, putative
nr
ID XP_012068875.1
description PREDICTED: exportin-T [Jatropha curcas]
swissprot
ID Q7PC79
description Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1
trembl
ID A0A067L9D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24693 PE=4 SV=1
Gene Ontology
ID GO:0005829
description exportin-t isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52752: 344427-350051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_380 0.0 - - PREDICTED: exportin-T [Jatropha curcas]
2 Hb_000012_260 0.0605031856 - - Far upstream element-binding 2 [Gossypium arboreum]
3 Hb_000494_070 0.0697350404 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
4 Hb_000173_490 0.0703283586 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
5 Hb_000579_230 0.0708253953 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
6 Hb_001946_340 0.0720102 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
7 Hb_002784_020 0.0752731883 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
8 Hb_000395_130 0.0753390265 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
9 Hb_017862_020 0.0753522665 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
10 Hb_001195_320 0.076389113 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
11 Hb_004235_080 0.0764423754 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
12 Hb_000166_130 0.076729484 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009615_170 0.077203169 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000614_210 0.0784400479 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
15 Hb_004676_010 0.0787249193 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
16 Hb_000170_150 0.0790902545 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_000703_150 0.079463203 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
18 Hb_031284_040 0.0800812849 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
19 Hb_007747_040 0.0800915206 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_003058_060 0.0804869512 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000656_380 Hb_000656_380 Hb_000012_260 Hb_000012_260 Hb_000656_380--Hb_000012_260 Hb_000494_070 Hb_000494_070 Hb_000656_380--Hb_000494_070 Hb_000173_490 Hb_000173_490 Hb_000656_380--Hb_000173_490 Hb_000579_230 Hb_000579_230 Hb_000656_380--Hb_000579_230 Hb_001946_340 Hb_001946_340 Hb_000656_380--Hb_001946_340 Hb_002784_020 Hb_002784_020 Hb_000656_380--Hb_002784_020 Hb_003835_070 Hb_003835_070 Hb_000012_260--Hb_003835_070 Hb_023226_080 Hb_023226_080 Hb_000012_260--Hb_023226_080 Hb_000614_210 Hb_000614_210 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000107_660 Hb_000107_660 Hb_000012_260--Hb_000107_660 Hb_003411_040 Hb_003411_040 Hb_000494_070--Hb_003411_040 Hb_000207_180 Hb_000207_180 Hb_000494_070--Hb_000207_180 Hb_001550_060 Hb_001550_060 Hb_000494_070--Hb_001550_060 Hb_000792_010 Hb_000792_010 Hb_000494_070--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_000494_070--Hb_000028_480 Hb_031284_040 Hb_031284_040 Hb_000173_490--Hb_031284_040 Hb_001409_020 Hb_001409_020 Hb_000173_490--Hb_001409_020 Hb_000030_190 Hb_000030_190 Hb_000173_490--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_000173_490--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000173_490--Hb_001248_060 Hb_001635_090 Hb_001635_090 Hb_000173_490--Hb_001635_090 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_003943_010 Hb_003943_010 Hb_001946_340--Hb_003943_010 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001377_160 Hb_001377_160 Hb_001946_340--Hb_001377_160 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6985 4.67154 2.80437 2.20769 3.31656 5.0799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67922 2.47426 3.15704 4.16241 2.43042

CAGE analysis