Hb_000107_660

Information

Type -
Description -
Location Contig107: 499359-511757
Sequence    

Annotation

kegg
ID rcu:RCOM_1252900
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012091856.1
description PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
swissprot
ID Q54H45
description Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1
trembl
ID A0A067JBL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21633 PE=4 SV=1
Gene Ontology
ID GO:0004672
description integrin-linked protein kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02227: 499285-511651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_660 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
2 Hb_003835_070 0.0651921019 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
3 Hb_003544_060 0.0675689017 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
4 Hb_000012_260 0.0731637756 - - Far upstream element-binding 2 [Gossypium arboreum]
5 Hb_002456_010 0.0740513965 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
6 Hb_105105_010 0.074500708 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
7 Hb_002217_170 0.0749495378 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
8 Hb_000617_230 0.0759373093 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
9 Hb_001009_280 0.0767320434 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
10 Hb_001221_430 0.0770736197 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
11 Hb_011618_090 0.077431353 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
12 Hb_001723_010 0.0803181864 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
13 Hb_002900_090 0.0808389922 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
14 Hb_005918_010 0.0820100234 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
15 Hb_000460_080 0.082238837 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
16 Hb_006922_010 0.0834566732 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
17 Hb_001434_080 0.0834934049 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
18 Hb_000684_510 0.0835817302 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
19 Hb_003228_110 0.0853754718 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
20 Hb_000402_150 0.0854711279 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_660 Hb_000107_660 Hb_003835_070 Hb_003835_070 Hb_000107_660--Hb_003835_070 Hb_003544_060 Hb_003544_060 Hb_000107_660--Hb_003544_060 Hb_000012_260 Hb_000012_260 Hb_000107_660--Hb_000012_260 Hb_002456_010 Hb_002456_010 Hb_000107_660--Hb_002456_010 Hb_105105_010 Hb_105105_010 Hb_000107_660--Hb_105105_010 Hb_002217_170 Hb_002217_170 Hb_000107_660--Hb_002217_170 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_003544_060--Hb_011618_090 Hb_000012_260--Hb_003835_070 Hb_000656_380 Hb_000656_380 Hb_000012_260--Hb_000656_380 Hb_023226_080 Hb_023226_080 Hb_000012_260--Hb_023226_080 Hb_000012_260--Hb_000614_210 Hb_003058_060 Hb_003058_060 Hb_000012_260--Hb_003058_060 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_002217_170--Hb_001195_530 Hb_000317_370 Hb_000317_370 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_002217_170--Hb_105105_010 Hb_002217_170--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44446 12.5735 9.30519 8.61436 7.11457 7.15137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09631 7.56411 7.98444 13.4818 6.20043

CAGE analysis