Hb_005918_010

Information

Type -
Description -
Location Contig5918: 12155-24955
Sequence    

Annotation

kegg
ID rcu:RCOM_0312010
description Protein SEY1, putative
nr
ID XP_012068982.1
description PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
swissprot
ID Q9SSN0
description Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=2 SV=2
trembl
ID A0A067KXC5
description Protein ROOT HAIR DEFECTIVE 3 homolog OS=Jatropha curcas GN=JCGZ_24771 PE=3 SV=1
Gene Ontology
ID GO:0005525
description protein root hair defective 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50271: 12260-24918 , PASA_asmbl_50272: 23362-23717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005918_010 0.0 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
2 Hb_005137_040 0.0463715185 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
3 Hb_012506_030 0.0564342899 - - AP-2 complex subunit alpha, putative [Ricinus communis]
4 Hb_003544_060 0.058379135 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
5 Hb_001153_190 0.0622506055 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
6 Hb_105105_010 0.0652803021 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
7 Hb_000441_220 0.0654786084 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_009083_070 0.0710633036 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
9 Hb_001408_140 0.0721987576 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
10 Hb_002205_250 0.0740393414 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
11 Hb_002492_010 0.0767486693 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
12 Hb_004586_060 0.077012855 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
13 Hb_003861_050 0.0770135192 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
14 Hb_003835_070 0.0782825892 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
15 Hb_011618_090 0.0794378766 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_013399_020 0.0797237505 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
17 Hb_002046_110 0.079774769 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
18 Hb_007062_030 0.080827257 - - hypothetical protein VITISV_039033 [Vitis vinifera]
19 Hb_000637_110 0.0809794555 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
20 Hb_001221_080 0.0813091047 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005918_010 Hb_005918_010 Hb_005137_040 Hb_005137_040 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_005137_040--Hb_012506_030 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_005137_040--Hb_000441_220 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_012506_030--Hb_000441_220 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_005000_190 Hb_005000_190 Hb_001153_190--Hb_005000_190 Hb_002805_190 Hb_002805_190 Hb_001153_190--Hb_002805_190 Hb_001981_030 Hb_001981_030 Hb_001153_190--Hb_001981_030 Hb_000162_030 Hb_000162_030 Hb_001153_190--Hb_000162_030 Hb_002046_110 Hb_002046_110 Hb_001153_190--Hb_002046_110 Hb_002205_250 Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.098 30.5027 33.42 30.5073 22.0644 25.153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0318 17.4554 27.9552 33.6797 19.5599

CAGE analysis