Hb_000441_220

Information

Type -
Description -
Location Contig441: 289329-295772
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16630g
description hypothetical protein
nr
ID XP_012075594.1
description PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9C5U8
description Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HISN8 PE=2 SV=1
trembl
ID V4U820
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015058mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description histidinol chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42650: 289605-295831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_220 0.0 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_020378_030 0.0490381017 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
3 Hb_012506_030 0.0520882105 - - AP-2 complex subunit alpha, putative [Ricinus communis]
4 Hb_001221_080 0.0592097481 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_013399_020 0.0592957952 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
6 Hb_004586_220 0.0604709817 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
7 Hb_001205_120 0.0636696014 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
8 Hb_005918_010 0.0654786084 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
9 Hb_000138_100 0.0666172336 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
10 Hb_005137_040 0.0675131513 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
11 Hb_001518_080 0.0675464312 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
12 Hb_005000_170 0.0684629315 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_001655_030 0.0691867104 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
14 Hb_105105_010 0.0696938254 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
15 Hb_000170_090 0.0700909193 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
16 Hb_105328_020 0.0701060964 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_000637_110 0.0715839987 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
18 Hb_001226_150 0.0716998261 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
19 Hb_015807_050 0.0718845492 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
20 Hb_002205_250 0.0719616466 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_220 Hb_000441_220 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_001408_140 Hb_001408_140 Hb_001221_080--Hb_001408_140 Hb_000029_300 Hb_000029_300 Hb_001221_080--Hb_000029_300 Hb_002909_140 Hb_002909_140 Hb_001221_080--Hb_002909_140 Hb_001221_080--Hb_013399_020 Hb_000213_010 Hb_000213_010 Hb_001221_080--Hb_000213_010 Hb_000170_090 Hb_000170_090 Hb_013399_020--Hb_000170_090 Hb_000923_010 Hb_000923_010 Hb_013399_020--Hb_000923_010 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_004586_220--Hb_001814_030 Hb_000537_050 Hb_000537_050 Hb_004586_220--Hb_000537_050 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_002044_150 Hb_002044_150 Hb_001205_120--Hb_002044_150 Hb_001584_140 Hb_001584_140 Hb_001205_120--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_001205_120--Hb_023344_120 Hb_000915_260 Hb_000915_260 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2136 18.3742 24.6618 22.6314 18.6969 21.238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8364 12.8219 23.0719 24.5938 21.6283

CAGE analysis