Hb_001584_140

Information

Type -
Description -
Location Contig1584: 99263-102685
Sequence    

Annotation

kegg
ID rcu:RCOM_1435690
description hypothetical protein
nr
ID XP_012088864.1
description PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13968: 99306-102489 , PASA_asmbl_13969: 103564-103877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_140 0.0 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
2 Hb_000637_150 0.0443903104 - - Protein CASP, putative [Ricinus communis]
3 Hb_000136_110 0.0668173815 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
4 Hb_001205_250 0.069733717 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
5 Hb_000441_220 0.0725387687 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001205_120 0.0730812112 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
7 Hb_001518_080 0.0742836929 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
8 Hb_001269_230 0.0744708624 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
9 Hb_015807_050 0.0764316227 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
10 Hb_001789_030 0.0773482219 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
11 Hb_032986_010 0.0788673493 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
12 Hb_109980_010 0.0790107655 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
13 Hb_000163_090 0.079843593 - - gamma-tubulin complex component, putative [Ricinus communis]
14 Hb_002889_010 0.0802359897 - - ubx domain-containing, putative [Ricinus communis]
15 Hb_001005_030 0.0805902649 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
16 Hb_003861_050 0.0807751178 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
17 Hb_001188_060 0.0813784894 - - -
18 Hb_000915_260 0.0818909052 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
19 Hb_001377_310 0.0820089303 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
20 Hb_000373_080 0.0828855916 - - PREDICTED: serine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_001584_140 Hb_001584_140 Hb_000637_150 Hb_000637_150 Hb_001584_140--Hb_000637_150 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001205_250 Hb_001205_250 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080 Hb_001789_030 Hb_001789_030 Hb_000637_150--Hb_001789_030 Hb_000637_150--Hb_001205_250 Hb_000637_150--Hb_001518_080 Hb_000008_290 Hb_000008_290 Hb_000637_150--Hb_000008_290 Hb_005488_020 Hb_005488_020 Hb_000637_150--Hb_005488_020 Hb_002498_140 Hb_002498_140 Hb_000136_110--Hb_002498_140 Hb_001005_030 Hb_001005_030 Hb_000136_110--Hb_001005_030 Hb_000373_080 Hb_000373_080 Hb_000136_110--Hb_000373_080 Hb_002811_270 Hb_002811_270 Hb_000136_110--Hb_002811_270 Hb_001269_230 Hb_001269_230 Hb_000136_110--Hb_001269_230 Hb_001188_060 Hb_001188_060 Hb_001205_250--Hb_001188_060 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_000441_220--Hb_001205_120 Hb_002044_150 Hb_002044_150 Hb_001205_120--Hb_002044_150 Hb_023344_120 Hb_023344_120 Hb_001205_120--Hb_023344_120 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1082 7.70256 15.281 14.0759 12.8101 12.7504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.74649 7.82867 11.5446 13.9473 11.8501

CAGE analysis