Hb_000637_150

Information

Type -
Description -
Location Contig637: 202027-213591
Sequence    

Annotation

kegg
ID rcu:RCOM_1617420
description Protein CASP, putative
nr
ID XP_002511964.1
description Protein CASP, putative [Ricinus communis]
swissprot
ID Q9LS42
description Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2
trembl
ID B9RE25
description Protein CASP, putative OS=Ricinus communis GN=RCOM_1617420 PE=4 SV=1
Gene Ontology
ID GO:0005768
description protein casp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51972: 201910-213492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_150 0.0 - - Protein CASP, putative [Ricinus communis]
2 Hb_001584_140 0.0443903104 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
3 Hb_001789_030 0.0761053117 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
4 Hb_001205_250 0.0828991116 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
5 Hb_001518_080 0.0872789059 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
6 Hb_000008_290 0.0873582132 - - PREDICTED: protein SAND [Jatropha curcas]
7 Hb_005488_020 0.0885691226 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
8 Hb_000136_110 0.0898190244 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
9 Hb_000890_060 0.0900877211 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
10 Hb_007426_110 0.0921289805 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
11 Hb_001655_030 0.0925907386 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
12 Hb_000915_260 0.0937615017 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
13 Hb_001981_040 0.0943675311 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
14 Hb_001205_120 0.0944195329 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
15 Hb_000441_220 0.0952534379 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_015807_050 0.0959145755 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
17 Hb_079526_040 0.0963060966 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
18 Hb_002811_270 0.096949703 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
19 Hb_000163_090 0.0974733923 - - gamma-tubulin complex component, putative [Ricinus communis]
20 Hb_001188_060 0.0975853039 - - -

Gene co-expression network

sample Hb_000637_150 Hb_000637_150 Hb_001584_140 Hb_001584_140 Hb_000637_150--Hb_001584_140 Hb_001789_030 Hb_001789_030 Hb_000637_150--Hb_001789_030 Hb_001205_250 Hb_001205_250 Hb_000637_150--Hb_001205_250 Hb_001518_080 Hb_001518_080 Hb_000637_150--Hb_001518_080 Hb_000008_290 Hb_000008_290 Hb_000637_150--Hb_000008_290 Hb_005488_020 Hb_005488_020 Hb_000637_150--Hb_005488_020 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001584_140--Hb_001518_080 Hb_000163_090 Hb_000163_090 Hb_001789_030--Hb_000163_090 Hb_000352_300 Hb_000352_300 Hb_001789_030--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001789_030--Hb_000184_070 Hb_001789_030--Hb_001584_140 Hb_001009_320 Hb_001009_320 Hb_001789_030--Hb_001009_320 Hb_001188_060 Hb_001188_060 Hb_001205_250--Hb_001188_060 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_000869_020 Hb_000869_020 Hb_005488_020--Hb_000869_020 Hb_000816_250 Hb_000816_250 Hb_005488_020--Hb_000816_250 Hb_000140_290 Hb_000140_290 Hb_005488_020--Hb_000140_290 Hb_005488_020--Hb_001584_140 Hb_023344_120 Hb_023344_120 Hb_005488_020--Hb_023344_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1371 11.1294 20.1454 21.5379 19.99 17.9011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8631 10.4269 16.6676 23.1235 21.8383

CAGE analysis