Hb_000136_110

Information

Type -
Description -
Location Contig136: 99140-101247
Sequence    

Annotation

kegg
ID ath:AT1G28490
description SYP61; syntaxin-61
nr
ID KJB69576.1
description hypothetical protein B456_011G031000, partial [Gossypium raimondii]
swissprot
ID Q94KK7
description Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1
trembl
ID A0A0D2UNB5
description Gossypium raimondii chromosome 11, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_011G031000 PE=4 SV=1
Gene Ontology
ID GO:0005802
description syntaxin-61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09994: 90366-101261 , PASA_asmbl_09995: 90366-101261 , PASA_asmbl_09996: 90935-100976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_110 0.0 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
2 Hb_001584_140 0.0668173815 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
3 Hb_002498_140 0.0715797153 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
4 Hb_001005_030 0.0722978266 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_000373_080 0.0765228718 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_002811_270 0.0769306364 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
7 Hb_001269_230 0.0770261908 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
8 Hb_010931_070 0.0800756284 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
9 Hb_132840_110 0.0827278968 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_001518_080 0.0828281882 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
11 Hb_006816_090 0.0828306501 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
12 Hb_002054_050 0.0841373008 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
13 Hb_032986_010 0.0852499613 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
14 Hb_011618_050 0.0854351692 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
15 Hb_000214_050 0.0856081249 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
16 Hb_000058_130 0.0859688092 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_001501_080 0.0865270841 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
18 Hb_002326_040 0.0872275527 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
19 Hb_138435_010 0.0874346157 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
20 Hb_015807_050 0.0881825242 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_110 Hb_000136_110 Hb_001584_140 Hb_001584_140 Hb_000136_110--Hb_001584_140 Hb_002498_140 Hb_002498_140 Hb_000136_110--Hb_002498_140 Hb_001005_030 Hb_001005_030 Hb_000136_110--Hb_001005_030 Hb_000373_080 Hb_000373_080 Hb_000136_110--Hb_000373_080 Hb_002811_270 Hb_002811_270 Hb_000136_110--Hb_002811_270 Hb_001269_230 Hb_001269_230 Hb_000136_110--Hb_001269_230 Hb_000637_150 Hb_000637_150 Hb_001584_140--Hb_000637_150 Hb_001205_250 Hb_001205_250 Hb_001584_140--Hb_001205_250 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080 Hb_010931_070 Hb_010931_070 Hb_002498_140--Hb_010931_070 Hb_000088_190 Hb_000088_190 Hb_002498_140--Hb_000088_190 Hb_001604_120 Hb_001604_120 Hb_002498_140--Hb_001604_120 Hb_000046_040 Hb_000046_040 Hb_002498_140--Hb_000046_040 Hb_044662_060 Hb_044662_060 Hb_002498_140--Hb_044662_060 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000373_080--Hb_000362_170 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_002811_270--Hb_000373_080 Hb_002811_270--Hb_003186_020 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_001269_230--Hb_000373_080 Hb_001269_230--Hb_001584_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6337 15.8116 40.8909 29.4013 27.6467 26.2878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6697 16.5163 22.7614 19.2487 28.2012

CAGE analysis