Hb_001604_120

Information

Type -
Description -
Location Contig1604: 146381-154036
Sequence    

Annotation

kegg
ID rcu:RCOM_1521270
description n6-DNA-methyltransferase, putative
nr
ID XP_012078573.1
description PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
swissprot
ID P74003
description Release factor glutamine methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1
trembl
ID A0A067KJS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14723 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hemk methyltransferase family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_120 0.0 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
2 Hb_000181_240 0.0929597304 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
3 Hb_002498_140 0.0950832508 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
4 Hb_000015_100 0.0953026204 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_000445_140 0.0959976947 - - hypothetical protein RCOM_0561550 [Ricinus communis]
6 Hb_000416_200 0.0986844312 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
7 Hb_000365_100 0.098761546 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
8 Hb_000984_270 0.1001822018 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000136_110 0.1053852079 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
10 Hb_000061_020 0.1061682255 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
11 Hb_001205_300 0.1063108321 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
12 Hb_000983_160 0.1076367552 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
13 Hb_000076_130 0.1092008962 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
14 Hb_013726_080 0.1099545143 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_004032_410 0.1099662437 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
16 Hb_007821_020 0.1116190811 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
17 Hb_001619_050 0.1121715465 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
18 Hb_001279_030 0.1124255738 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
19 Hb_003462_070 0.1132283667 - - arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_000062_370 0.1145570787 - - beta-ketoacyl-ACP reductase [Vernicia fordii]

Gene co-expression network

sample Hb_001604_120 Hb_001604_120 Hb_000181_240 Hb_000181_240 Hb_001604_120--Hb_000181_240 Hb_002498_140 Hb_002498_140 Hb_001604_120--Hb_002498_140 Hb_000015_100 Hb_000015_100 Hb_001604_120--Hb_000015_100 Hb_000445_140 Hb_000445_140 Hb_001604_120--Hb_000445_140 Hb_000416_200 Hb_000416_200 Hb_001604_120--Hb_000416_200 Hb_000365_100 Hb_000365_100 Hb_001604_120--Hb_000365_100 Hb_001279_030 Hb_001279_030 Hb_000181_240--Hb_001279_030 Hb_000346_060 Hb_000346_060 Hb_000181_240--Hb_000346_060 Hb_000184_170 Hb_000184_170 Hb_000181_240--Hb_000184_170 Hb_002374_240 Hb_002374_240 Hb_000181_240--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_000136_110 Hb_000136_110 Hb_002498_140--Hb_000136_110 Hb_010931_070 Hb_010931_070 Hb_002498_140--Hb_010931_070 Hb_000088_190 Hb_000088_190 Hb_002498_140--Hb_000088_190 Hb_000046_040 Hb_000046_040 Hb_002498_140--Hb_000046_040 Hb_044662_060 Hb_044662_060 Hb_002498_140--Hb_044662_060 Hb_000948_170 Hb_000948_170 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_001619_050 Hb_001619_050 Hb_000445_140--Hb_001619_050 Hb_001014_100 Hb_001014_100 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_001824_080 Hb_001824_080 Hb_000416_200--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_000416_200--Hb_004109_120 Hb_007821_020 Hb_007821_020 Hb_000416_200--Hb_007821_020 Hb_000880_070 Hb_000880_070 Hb_000416_200--Hb_000880_070 Hb_001348_080 Hb_001348_080 Hb_000416_200--Hb_001348_080 Hb_000567_070 Hb_000567_070 Hb_000416_200--Hb_000567_070 Hb_000136_140 Hb_000136_140 Hb_000365_100--Hb_000136_140 Hb_000347_040 Hb_000347_040 Hb_000365_100--Hb_000347_040 Hb_000188_050 Hb_000188_050 Hb_000365_100--Hb_000188_050 Hb_013726_080 Hb_013726_080 Hb_000365_100--Hb_013726_080 Hb_000365_100--Hb_002498_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12049 1.15848 4.62067 2.54628 3.86081 3.63665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64918 1.38198 2.58372 2.13148 4.98845

CAGE analysis