Hb_008206_060

Information

Type -
Description -
Location Contig8206: 57451-68768
Sequence    

Annotation

kegg
ID rcu:RCOM_0348860
description protein translocase secy subunit, putative
nr
ID XP_012077483.1
description PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q38885
description Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2
trembl
ID A0A067KDT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07813 PE=3 SV=1
Gene Ontology
ID GO:0016021
description preprotein translocase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59585: 57450-68483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008206_060 0.0 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000015_100 0.0923346032 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_031284_070 0.095613323 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
4 Hb_010812_050 0.0956795165 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
5 Hb_000331_130 0.0963864588 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
6 Hb_000363_060 0.0966094464 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000445_140 0.0984018844 - - hypothetical protein RCOM_0561550 [Ricinus communis]
8 Hb_002027_090 0.0997682781 - - -
9 Hb_000948_170 0.1010946058 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
10 Hb_001619_050 0.1028498046 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
11 Hb_001660_120 0.1038576223 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
12 Hb_065525_130 0.1040186177 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_003462_070 0.1121321657 - - arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_005271_160 0.1123870396 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
15 Hb_001662_140 0.1131636355 - - PREDICTED: ankyrin repeat domain-containing protein, chloroplastic [Jatropha curcas]
16 Hb_000084_280 0.1131779518 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_006816_180 0.1146918882 - - -
18 Hb_000358_140 0.1159535212 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000627_250 0.1161994367 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
20 Hb_025557_050 0.1166919533 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]

Gene co-expression network

sample Hb_008206_060 Hb_008206_060 Hb_000015_100 Hb_000015_100 Hb_008206_060--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_008206_060--Hb_031284_070 Hb_010812_050 Hb_010812_050 Hb_008206_060--Hb_010812_050 Hb_000331_130 Hb_000331_130 Hb_008206_060--Hb_000331_130 Hb_000363_060 Hb_000363_060 Hb_008206_060--Hb_000363_060 Hb_000445_140 Hb_000445_140 Hb_008206_060--Hb_000445_140 Hb_000948_170 Hb_000948_170 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_000015_100--Hb_031284_070 Hb_000816_100 Hb_000816_100 Hb_000015_100--Hb_000816_100 Hb_031284_070--Hb_000948_170 Hb_031284_070--Hb_000627_250 Hb_021346_030 Hb_021346_030 Hb_031284_070--Hb_021346_030 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_001205_300 Hb_001205_300 Hb_031284_070--Hb_001205_300 Hb_000856_420 Hb_000856_420 Hb_010812_050--Hb_000856_420 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_001662_140 Hb_001662_140 Hb_000331_130--Hb_001662_140 Hb_000331_130--Hb_001660_120 Hb_007035_040 Hb_007035_040 Hb_000331_130--Hb_007035_040 Hb_004884_180 Hb_004884_180 Hb_000331_130--Hb_004884_180 Hb_000331_130--Hb_000363_060 Hb_002233_130 Hb_002233_130 Hb_000331_130--Hb_002233_130 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_001619_050 Hb_001619_050 Hb_000445_140--Hb_001619_050 Hb_001014_100 Hb_001014_100 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3662 16.4169 32.7134 11.6443 18.4096 25.9253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6717 5.97447 8.7884 8.59038 40.8014

CAGE analysis