Hb_005496_050

Information

Type -
Description -
Location Contig5496: 47453-54278
Sequence    

Annotation

kegg
ID rcu:RCOM_1587640
description hypothetical protein
nr
ID XP_012068239.1
description PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
swissprot
ID Q94AI1
description QWRF motif-containing protein 2 OS=Arabidopsis thaliana GN=QWRF2 PE=2 SV=1
trembl
ID A0A067KZK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48209: 47678-54134 , PASA_asmbl_48210: 52946-53793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_050 0.0 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
2 Hb_001014_100 0.0695335637 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
3 Hb_006816_180 0.0717761726 - - -
4 Hb_041327_020 0.0799137661 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000445_140 0.0805877212 - - hypothetical protein RCOM_0561550 [Ricinus communis]
6 Hb_001619_050 0.0817391886 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
7 Hb_002150_140 0.0839339271 - - PREDICTED: girdin-like [Jatropha curcas]
8 Hb_000261_050 0.0917771553 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
9 Hb_002027_090 0.0968764912 - - -
10 Hb_017151_010 0.0972975859 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
11 Hb_025557_050 0.100173778 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
12 Hb_001660_120 0.1026161719 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_132840_110 0.1031642642 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
14 Hb_001279_040 0.1075217508 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
15 Hb_000363_060 0.1081072788 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_000555_020 0.1094894126 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
17 Hb_013405_080 0.1095917378 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
18 Hb_000589_110 0.1106786041 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
19 Hb_002328_040 0.1124168566 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
20 Hb_087313_010 0.1165322776 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005496_050 Hb_005496_050 Hb_001014_100 Hb_001014_100 Hb_005496_050--Hb_001014_100 Hb_006816_180 Hb_006816_180 Hb_005496_050--Hb_006816_180 Hb_041327_020 Hb_041327_020 Hb_005496_050--Hb_041327_020 Hb_000445_140 Hb_000445_140 Hb_005496_050--Hb_000445_140 Hb_001619_050 Hb_001619_050 Hb_005496_050--Hb_001619_050 Hb_002150_140 Hb_002150_140 Hb_005496_050--Hb_002150_140 Hb_001014_100--Hb_000445_140 Hb_000261_050 Hb_000261_050 Hb_001014_100--Hb_000261_050 Hb_001014_100--Hb_001619_050 Hb_132840_110 Hb_132840_110 Hb_001014_100--Hb_132840_110 Hb_002811_270 Hb_002811_270 Hb_001014_100--Hb_002811_270 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_025557_050 Hb_025557_050 Hb_006816_180--Hb_025557_050 Hb_000300_670 Hb_000300_670 Hb_006816_180--Hb_000300_670 Hb_098209_010 Hb_098209_010 Hb_041327_020--Hb_098209_010 Hb_041327_020--Hb_132840_110 Hb_041327_020--Hb_001619_050 Hb_000320_470 Hb_000320_470 Hb_041327_020--Hb_000320_470 Hb_041327_020--Hb_000445_140 Hb_000445_140--Hb_001619_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_001619_050--Hb_017151_010 Hb_001619_050--Hb_002870_020 Hb_000555_020 Hb_000555_020 Hb_002150_140--Hb_000555_020 Hb_114310_070 Hb_114310_070 Hb_002150_140--Hb_114310_070 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0689 14.7151 20.6048 16.0503 13.2504 11.3187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.08089 8.24536 10.07 6.43003 30.9494

CAGE analysis