Hb_000300_670

Information

Type -
Description -
Location Contig300: 599939-601364
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05090g
description POPTRDRAFT_573929; hypothetical protein
nr
ID XP_012070444.1
description PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KU91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31638: 598709-601276 , PASA_asmbl_31639: 600806-601044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_670 0.0 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
2 Hb_025557_050 0.0920761052 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
3 Hb_000640_160 0.0930338386 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
4 Hb_003029_070 0.0990817823 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004970_190 0.0998795552 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_006816_180 0.1000898246 - - -
7 Hb_007803_030 0.101992925 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
8 Hb_178968_140 0.1020279081 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001328_030 0.1082763456 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
10 Hb_001789_190 0.1104028111 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
11 Hb_000181_090 0.111270842 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
12 Hb_065755_030 0.1142106505 - - -
13 Hb_001541_050 0.1149000987 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
14 Hb_000920_030 0.1150920444 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_017151_010 0.1160910719 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
16 Hb_000340_420 0.1168546273 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
17 Hb_032202_080 0.1174134257 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
18 Hb_000053_110 0.1180660636 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001619_050 0.1181383257 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
20 Hb_000753_240 0.1185002876 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_670 Hb_000300_670 Hb_025557_050 Hb_025557_050 Hb_000300_670--Hb_025557_050 Hb_000640_160 Hb_000640_160 Hb_000300_670--Hb_000640_160 Hb_003029_070 Hb_003029_070 Hb_000300_670--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000300_670--Hb_004970_190 Hb_006816_180 Hb_006816_180 Hb_000300_670--Hb_006816_180 Hb_007803_030 Hb_007803_030 Hb_000300_670--Hb_007803_030 Hb_017151_010 Hb_017151_010 Hb_025557_050--Hb_017151_010 Hb_001789_190 Hb_001789_190 Hb_025557_050--Hb_001789_190 Hb_010812_050 Hb_010812_050 Hb_025557_050--Hb_010812_050 Hb_008059_010 Hb_008059_010 Hb_025557_050--Hb_008059_010 Hb_004097_070 Hb_004097_070 Hb_025557_050--Hb_004097_070 Hb_031284_010 Hb_031284_010 Hb_025557_050--Hb_031284_010 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_004970_190--Hb_000753_240 Hb_005496_050 Hb_005496_050 Hb_006816_180--Hb_005496_050 Hb_000062_260 Hb_000062_260 Hb_006816_180--Hb_000062_260 Hb_000358_140 Hb_000358_140 Hb_006816_180--Hb_000358_140 Hb_002027_090 Hb_002027_090 Hb_006816_180--Hb_002027_090 Hb_006816_180--Hb_025557_050 Hb_004398_030 Hb_004398_030 Hb_007803_030--Hb_004398_030 Hb_001014_100 Hb_001014_100 Hb_007803_030--Hb_001014_100 Hb_007803_030--Hb_025557_050 Hb_007803_030--Hb_006816_180 Hb_007803_030--Hb_000640_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.8748 31.5841 53.2635 26.4304 31.9193 29.307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2312 32.0069 17.6706 10.5037 54.4232

CAGE analysis