Hb_000205_190

Information

Type transcription factor
Description TF Family: G2-like
Location Contig205: 264161-268946
Sequence    

Annotation

kegg
ID rcu:RCOM_0609760
description DNA binding protein, putative
nr
ID XP_002521993.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9S7M4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0609760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21120: 264568-267739 , PASA_asmbl_21121: 267856-268789 , PASA_asmbl_21122: 267944-268117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_190 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_001158_070 0.055679294 - - Protein DEK, putative [Ricinus communis]
3 Hb_004970_190 0.0560535657 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000804_040 0.0584117651 - - protein with unknown function [Ricinus communis]
5 Hb_008165_060 0.0616399175 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
6 Hb_001001_080 0.0639959088 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
7 Hb_007007_120 0.0667485224 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
8 Hb_000883_020 0.0681037181 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_002013_020 0.0683394685 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
10 Hb_002876_230 0.0701625031 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
11 Hb_000866_010 0.0703180808 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007657_010 0.0724851244 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000866_260 0.0737388305 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
14 Hb_000331_110 0.0743279425 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_000343_250 0.0751833528 - - PREDICTED: protein CASC3 [Jatropha curcas]
16 Hb_004052_080 0.0754592273 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007007_060 0.075930058 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
18 Hb_001975_090 0.0776609213 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
19 Hb_000917_060 0.0780001803 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_002997_080 0.078916925 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_190 Hb_000205_190 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_004970_190 Hb_004970_190 Hb_000205_190--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_005000_190 Hb_005000_190 Hb_001158_070--Hb_005000_190 Hb_001158_070--Hb_008165_060 Hb_000010_400 Hb_000010_400 Hb_001158_070--Hb_000010_400 Hb_000603_280 Hb_000603_280 Hb_001158_070--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_001158_070--Hb_002843_120 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000804_040--Hb_000753_240 Hb_000329_320 Hb_000329_320 Hb_008165_060--Hb_000329_320 Hb_001700_010 Hb_001700_010 Hb_008165_060--Hb_001700_010 Hb_000917_060 Hb_000917_060 Hb_008165_060--Hb_000917_060 Hb_005269_070 Hb_005269_070 Hb_008165_060--Hb_005269_070 Hb_000599_180 Hb_000599_180 Hb_001001_080--Hb_000599_180 Hb_007657_010 Hb_007657_010 Hb_001001_080--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_001001_080--Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_001001_080--Hb_001789_190 Hb_001001_080--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0853 8.3248 13.1339 7.12427 10.0047 12.3143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.62011 10.0074 11.7208 7.68945 11.4939

CAGE analysis