Hb_000869_020

Information

Type -
Description -
Location Contig869: 10630-16954
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02820g
description POPTRDRAFT_569612; hypothetical protein
nr
ID XP_012080873.1
description PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LL95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17073 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61075: 10316-17347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000869_020 0.0 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
2 Hb_003513_010 0.055793087 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
3 Hb_004970_190 0.0619010791 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_004052_080 0.0699307147 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003861_060 0.0770221045 - - PREDICTED: treacle protein [Jatropha curcas]
6 Hb_007007_120 0.0772914595 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
7 Hb_005588_080 0.0773630848 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
8 Hb_002235_250 0.0775134164 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
9 Hb_005488_020 0.0790353439 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_002600_090 0.0791323718 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003531_080 0.0809109119 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
12 Hb_000053_110 0.0809113736 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001700_010 0.0810817082 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
14 Hb_000205_190 0.0812851144 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_002013_020 0.083192063 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
16 Hb_000866_010 0.0833099192 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000245_220 0.0838620823 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
18 Hb_014834_150 0.0843525888 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000137_040 0.0845278612 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
20 Hb_002304_150 0.0852529848 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000869_020 Hb_000869_020 Hb_003513_010 Hb_003513_010 Hb_000869_020--Hb_003513_010 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_003513_010--Hb_003861_060 Hb_003513_010--Hb_007007_120 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_004970_190--Hb_007007_120 Hb_004970_190--Hb_003513_010 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_004052_080--Hb_003861_060 Hb_003861_060--Hb_014834_150 Hb_003861_060--Hb_003428_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_007007_120--Hb_003428_010 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_000339_040 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_005588_080--Hb_003428_010 Hb_005588_080--Hb_003513_010 Hb_005588_080--Hb_003861_060 Hb_005588_080--Hb_007007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1389 10.8409 25.8508 17.1205 12.8352 15.0287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.041 19.8505 17.6112 12.713 19.9625

CAGE analysis