Hb_000059_380

Information

Type -
Description -
Location Contig59: 331071-334945
Sequence    

Annotation

kegg
ID rcu:RCOM_1502600
description hypothetical protein
nr
ID XP_012090523.1
description PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26319 PE=4 SV=1
Gene Ontology
ID GO:0031072
description orange protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50190: 331126-334847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_380 0.0 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
2 Hb_005588_080 0.0614319152 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
3 Hb_002205_230 0.0664286822 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_000230_400 0.069228175 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_010068_080 0.0794796352 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
6 Hb_007007_120 0.0803579901 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
7 Hb_000699_030 0.081377353 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
8 Hb_011930_020 0.0839833427 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
9 Hb_007765_100 0.0844134867 - - PREDICTED: helicase SKI2W [Jatropha curcas]
10 Hb_000749_010 0.0845101563 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
11 Hb_003428_010 0.0848044261 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
12 Hb_001377_190 0.0870800221 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
13 Hb_000317_050 0.0872104951 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
14 Hb_005116_050 0.0872248929 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_004837_180 0.0886394816 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
16 Hb_000069_380 0.0887033969 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
17 Hb_009296_070 0.0902773596 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
18 Hb_005489_020 0.0912427836 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001623_270 0.0912990076 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
20 Hb_002218_090 0.0915194517 - - Poly(rC)-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000059_380 Hb_000059_380 Hb_005588_080 Hb_005588_080 Hb_000059_380--Hb_005588_080 Hb_002205_230 Hb_002205_230 Hb_000059_380--Hb_002205_230 Hb_000230_400 Hb_000230_400 Hb_000059_380--Hb_000230_400 Hb_010068_080 Hb_010068_080 Hb_000059_380--Hb_010068_080 Hb_007007_120 Hb_007007_120 Hb_000059_380--Hb_007007_120 Hb_000699_030 Hb_000699_030 Hb_000059_380--Hb_000699_030 Hb_005588_080--Hb_000230_400 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_005588_080--Hb_007007_120 Hb_000749_010 Hb_000749_010 Hb_002205_230--Hb_000749_010 Hb_000599_270 Hb_000599_270 Hb_002205_230--Hb_000599_270 Hb_001589_010 Hb_001589_010 Hb_002205_230--Hb_001589_010 Hb_021374_030 Hb_021374_030 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000327_270 Hb_000327_270 Hb_000699_030--Hb_000327_270 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1332 21.2193 24.8267 12.0721 13.6218 12.9818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0707 20.1205 16.5139 16.0215 28.8026

CAGE analysis