Hb_000699_030

Information

Type -
Description -
Location Contig699: 28220-35994
Sequence    

Annotation

kegg
ID rcu:RCOM_0608890
description serine/threonine protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012089318.1
description PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID B9S7J9
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_0608890 PE=3 SV=1
Gene Ontology
ID GO:0016787
description serine threonine-protein phosphatase pp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54669: 28280-35955 , PASA_asmbl_54670: 28284-30357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_030 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
2 Hb_000708_030 0.0554491762 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
3 Hb_000327_270 0.064212994 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
4 Hb_007007_120 0.0645188786 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
5 Hb_005116_160 0.0676157615 transcription factor TF Family: TRAF -
6 Hb_005489_020 0.0681678494 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003680_120 0.0684811582 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
8 Hb_000331_680 0.0689254866 - - Protein bem46, putative [Ricinus communis]
9 Hb_005730_040 0.0716287775 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
10 Hb_003428_010 0.071656102 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
11 Hb_005588_080 0.0722040709 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
12 Hb_000069_380 0.0726038323 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
13 Hb_010368_010 0.0727057181 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_000732_010 0.0741381671 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
15 Hb_013358_040 0.0762527128 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
16 Hb_065525_040 0.0767347178 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
17 Hb_004970_190 0.0772015758 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_005271_220 0.0782322551 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_012395_230 0.0798148137 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_000915_180 0.0798791686 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000699_030 Hb_000699_030 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000327_270 Hb_000327_270 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_000708_030--Hb_003680_120 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_000327_270--Hb_003680_120 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_000684_470 Hb_000684_470 Hb_005116_160--Hb_000684_470 Hb_000732_010 Hb_000732_010 Hb_005116_160--Hb_000732_010 Hb_001307_220 Hb_001307_220 Hb_005116_160--Hb_001307_220 Hb_001369_730 Hb_001369_730 Hb_005116_160--Hb_001369_730 Hb_005463_100 Hb_005463_100 Hb_005116_160--Hb_005463_100 Hb_005779_080 Hb_005779_080 Hb_005489_020--Hb_005779_080 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_001227_030 Hb_001227_030 Hb_005489_020--Hb_001227_030 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_000665_100 Hb_000665_100 Hb_003680_120--Hb_000665_100 Hb_002110_190 Hb_002110_190 Hb_003680_120--Hb_002110_190 Hb_011037_030 Hb_011037_030 Hb_003680_120--Hb_011037_030 Hb_003680_120--Hb_005730_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2968 31.5335 31.4158 29.205 24.0798 29.146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.803 30.9166 29.5288 23.2549 38.7296

CAGE analysis