Hb_002890_290

Information

Type -
Description -
Location Contig2890: 335386-347051
Sequence    

Annotation

kegg
ID rcu:RCOM_0824980
description amidase, putative (EC:3.5.1.4)
nr
ID XP_012069135.1
description PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
swissprot
ID F4KCL7
description Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1
trembl
ID A0A067KXG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24900 PE=4 SV=1
Gene Ontology
ID GO:0005737
description outer envelope protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30221: 335588-338751 , PASA_asmbl_30222: 341119-341599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_290 0.0 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
2 Hb_001227_030 0.0631726434 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
3 Hb_005489_020 0.0643647168 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000331_680 0.0652068734 - - Protein bem46, putative [Ricinus communis]
5 Hb_000025_410 0.0664715677 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
6 Hb_152175_010 0.0665958275 - - Protein grpE, putative [Ricinus communis]
7 Hb_003464_090 0.0693024081 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_167498_010 0.0700844774 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
9 Hb_000886_050 0.0704066928 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
10 Hb_000092_020 0.0714611859 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
11 Hb_007163_120 0.073983528 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
12 Hb_003030_060 0.0741128868 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
13 Hb_003001_080 0.0745556738 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
14 Hb_001546_080 0.0755356437 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
15 Hb_001638_270 0.0756009025 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
16 Hb_001114_140 0.0758170525 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
17 Hb_000563_230 0.0765071455 - - phospholipase d zeta, putative [Ricinus communis]
18 Hb_000395_130 0.0776860454 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
19 Hb_000243_250 0.0783774641 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
20 Hb_000003_190 0.07852254 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_002890_290 Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_001227_030--Hb_005489_020 Hb_001227_030--Hb_000025_410 Hb_005779_080 Hb_005779_080 Hb_001227_030--Hb_005779_080 Hb_001227_030--Hb_152175_010 Hb_004837_180 Hb_004837_180 Hb_001227_030--Hb_004837_180 Hb_005489_020--Hb_005779_080 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_021443_040 Hb_021443_040 Hb_005489_020--Hb_021443_040 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_000077_140 Hb_000077_140 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_000331_680--Hb_003464_090 Hb_000069_310 Hb_000069_310 Hb_000331_680--Hb_000069_310 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_008406_200 Hb_008406_200 Hb_000025_410--Hb_008406_200 Hb_000025_410--Hb_005653_090 Hb_000696_230 Hb_000696_230 Hb_000025_410--Hb_000696_230 Hb_000403_050 Hb_000403_050 Hb_000025_410--Hb_000403_050 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_003001_080 Hb_003001_080 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8641 6.76076 4.14199 3.09861 4.54877 4.16642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01191 5.09122 4.12132 4.61164 4.10485

CAGE analysis