Hb_000563_230

Information

Type -
Description -
Location Contig563: 137399-147579
Sequence    

Annotation

kegg
ID rcu:RCOM_0682600
description phospholipase d zeta, putative (EC:3.1.4.4 1.3.1.74)
nr
ID XP_002516974.1
description phospholipase d zeta, putative [Ricinus communis]
swissprot
ID Q9LRZ5
description Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=1 SV=1
trembl
ID B9RTA5
description Phospholipase d zeta, putative OS=Ricinus communis GN=RCOM_0682600 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phospholipase d p1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48903: 137784-143553 , PASA_asmbl_48904: 143765-144849 , PASA_asmbl_48905: 144871-146601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_230 0.0 - - phospholipase d zeta, putative [Ricinus communis]
2 Hb_152175_010 0.0627992615 - - Protein grpE, putative [Ricinus communis]
3 Hb_003125_120 0.0654546857 - - PREDICTED: TITAN-like protein [Jatropha curcas]
4 Hb_008453_140 0.0684239229 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_014109_040 0.0704135654 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
6 Hb_003001_080 0.0709438808 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
7 Hb_000340_400 0.0720809275 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_001227_030 0.0738261575 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
9 Hb_002585_040 0.0761718074 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
10 Hb_002234_140 0.0762706751 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
11 Hb_002890_290 0.0765071455 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
12 Hb_002652_030 0.0765863036 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
13 Hb_000403_050 0.0766236548 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
14 Hb_000096_070 0.0769735529 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
15 Hb_007054_060 0.0773358839 - - -
16 Hb_003935_020 0.0774539331 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000959_210 0.0774800493 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
18 Hb_001163_050 0.0791188488 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
19 Hb_000038_170 0.0797266104 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
20 Hb_036790_100 0.0809713343 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_230 Hb_000563_230 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_000563_230--Hb_008453_140 Hb_014109_040 Hb_014109_040 Hb_000563_230--Hb_014109_040 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000340_400 Hb_000340_400 Hb_000563_230--Hb_000340_400 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_152175_010--Hb_003001_080 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_000589_120 Hb_000589_120 Hb_014109_040--Hb_000589_120 Hb_014109_040--Hb_003125_120 Hb_007576_080 Hb_007576_080 Hb_014109_040--Hb_007576_080 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_014109_040--Hb_000334_280 Hb_003001_080--Hb_001163_050 Hb_003001_080--Hb_000340_400 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.675 11.6231 8.10049 6.0389 10.885 8.74631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0443 14.4306 6.66139 7.74394 6.69454

CAGE analysis