Hb_003001_080

Information

Type -
Description -
Location Contig3001: 77878-84506
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24730g
description POPTRDRAFT_711559; forkhead-associated domain-containing family protein
nr
ID XP_012085062.1
description PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
swissprot
ID Q9SFV2
description FHA domain-containing protein FHA2 OS=Arabidopsis thaliana GN=FHA2 PE=1 SV=1
trembl
ID A0A067JQX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17514 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31662: 77986-78320 , PASA_asmbl_31663: 80950-81260 , PASA_asmbl_31666: 78460-84379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_080 0.0 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
2 Hb_001163_050 0.0561249817 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
3 Hb_000340_400 0.0612904479 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_152175_010 0.0622733654 - - Protein grpE, putative [Ricinus communis]
5 Hb_008453_140 0.0649587898 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
6 Hb_004837_180 0.0658080536 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_032202_140 0.0669272874 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
8 Hb_013358_040 0.0671996975 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
9 Hb_000331_550 0.0678274054 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_001456_060 0.0688668136 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
11 Hb_000915_180 0.0688826622 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
12 Hb_002217_110 0.0691263073 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
13 Hb_000868_110 0.0697585473 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_001359_050 0.0706943812 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003464_090 0.0709320585 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_000563_230 0.0709438808 - - phospholipase d zeta, putative [Ricinus communis]
17 Hb_002073_200 0.0726109901 - - Phosphatase 2A-2 [Theobroma cacao]
18 Hb_005271_220 0.072615133 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_002890_290 0.0745556738 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
20 Hb_000331_680 0.0745941792 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_003001_080 Hb_003001_080 Hb_001163_050 Hb_001163_050 Hb_003001_080--Hb_001163_050 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_001163_050--Hb_008453_140 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_003125_120 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_002013_020 Hb_002013_020 Hb_032202_140--Hb_002013_020 Hb_032202_140--Hb_001163_050 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.72629 12.3072 12.0023 7.52402 10.2324 9.02763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0354 13.0569 9.76493 7.79173 8.0983

CAGE analysis