Hb_152175_010

Information

Type -
Description -
Location Contig152175: 3200-6548
Sequence    

Annotation

kegg
ID rcu:RCOM_1033170
description Protein grpE, putative (EC:5.1.3.1)
nr
ID XP_002513845.1
description Protein grpE, putative [Ricinus communis]
swissprot
ID Q8DJB3
description Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1
trembl
ID B9RJC6
description GrpE protein homolog OS=Ricinus communis GN=RCOM_1033170 PE=3 SV=1
Gene Ontology
ID GO:0005759
description grpe protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13078: 2971-3553 , PASA_asmbl_13079: 5152-6587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152175_010 0.0 - - Protein grpE, putative [Ricinus communis]
2 Hb_005137_050 0.0602955081 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
3 Hb_003001_080 0.0622733654 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
4 Hb_000563_230 0.0627992615 - - phospholipase d zeta, putative [Ricinus communis]
5 Hb_002890_290 0.0665958275 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
6 Hb_001227_030 0.0683315658 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
7 Hb_142368_010 0.0708087424 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
8 Hb_008453_140 0.0752880069 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
9 Hb_000308_030 0.0756542824 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
10 Hb_000886_050 0.0779500278 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
11 Hb_003142_030 0.0787285689 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
12 Hb_000803_070 0.0789767255 - - PREDICTED: protein TRAUCO [Jatropha curcas]
13 Hb_000521_320 0.0790641079 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
14 Hb_000866_410 0.0794512256 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
15 Hb_000402_080 0.0809746386 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
16 Hb_000302_270 0.0822113581 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_000403_050 0.0824634769 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
18 Hb_000010_110 0.0825047431 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_002217_110 0.0828278543 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
20 Hb_000696_090 0.082878272 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]

Gene co-expression network

sample Hb_152175_010 Hb_152175_010 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_003001_080 Hb_003001_080 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240 Hb_001163_050 Hb_001163_050 Hb_003001_080--Hb_001163_050 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_000563_230--Hb_008453_140 Hb_014109_040 Hb_014109_040 Hb_000563_230--Hb_014109_040 Hb_000563_230--Hb_003001_080 Hb_000563_230--Hb_000340_400 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_001227_030--Hb_005489_020 Hb_001227_030--Hb_000025_410 Hb_005779_080 Hb_005779_080 Hb_001227_030--Hb_005779_080 Hb_001227_030--Hb_004837_180 Hb_021576_100 Hb_021576_100 Hb_142368_010--Hb_021576_100 Hb_142368_010--Hb_003001_080 Hb_142368_010--Hb_001227_030 Hb_142368_010--Hb_005137_050 Hb_001862_210 Hb_001862_210 Hb_142368_010--Hb_001862_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7441 26.0412 21.5249 14.011 23.7991 17.1547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6528 24.4356 17.4046 13.7508 14.3604

CAGE analysis