Hb_003464_090

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3464: 73320-79516
Sequence    

Annotation

kegg
ID rcu:RCOM_0840950
description transcription factor, putative
nr
ID XP_012082543.1
description PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
swissprot
ID Q2JS42
description Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1
trembl
ID A0A067KAG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16629 PE=3 SV=1
Gene Ontology
ID GO:0005737
description uridylate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36134: 73587-73732 , PASA_asmbl_36135: 73803-79460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_090 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
2 Hb_007163_120 0.0406423294 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
3 Hb_003849_110 0.0444924346 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_001359_050 0.05454754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001408_140 0.0554708183 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
6 Hb_005653_090 0.0562395632 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
7 Hb_007765_110 0.0563539907 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
8 Hb_024621_040 0.0577318098 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
9 Hb_000331_680 0.0580787097 - - Protein bem46, putative [Ricinus communis]
10 Hb_162275_050 0.0609355576 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
11 Hb_001195_530 0.0609402718 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003370_030 0.0617099013 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
13 Hb_033772_030 0.0618880111 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
14 Hb_002217_170 0.0626448982 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
15 Hb_000696_230 0.0637108028 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
16 Hb_000868_090 0.0646577347 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
17 Hb_002818_030 0.0652825779 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
18 Hb_000484_130 0.0655301413 - - splicing factor, putative [Ricinus communis]
19 Hb_000922_360 0.0658848561 - - -
20 Hb_000172_430 0.0659278046 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003464_090 Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_000868_090 Hb_000868_090 Hb_007765_110--Hb_000868_090 Hb_007765_110--Hb_033772_030 Hb_007765_110--Hb_003370_030 Hb_007765_110--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64656 10.8527 7.38147 7.00653 6.93996 6.63597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.1326 8.16922 7.88578 8.31038 6.40529

CAGE analysis