Hb_003428_010

Information

Type -
Description -
Location Contig3428: 10036-14382
Sequence    

Annotation

kegg
ID rcu:RCOM_0937680
description Minor allergen Alt a, putative
nr
ID XP_012069612.1
description PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
swissprot
ID O23207
description Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 OS=Arabidopsis thaliana GN=At4g36750 PE=1 SV=1
trembl
ID A0A067LG27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10063 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable nad h dehydrogenase fqr1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35782: 10040-14354 , PASA_asmbl_35784: 11982-12489 , PASA_asmbl_35785: 14084-14332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_010 0.0 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
2 Hb_004052_080 0.0477353555 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007007_120 0.0511241122 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
4 Hb_003849_110 0.0519104083 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_002849_130 0.0525688406 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
6 Hb_003861_060 0.0535908245 - - PREDICTED: treacle protein [Jatropha curcas]
7 Hb_014834_150 0.0541523171 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_010068_080 0.0558585506 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
9 Hb_000339_040 0.056862657 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
10 Hb_009911_030 0.0569754852 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
11 Hb_093458_040 0.0589835152 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_013358_040 0.0600547816 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
13 Hb_005730_040 0.061318906 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
14 Hb_001408_140 0.0615570924 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
15 Hb_005588_080 0.0620155547 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
16 Hb_000365_230 0.062173657 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
17 Hb_005867_070 0.0622834459 - - DNA binding protein, putative [Ricinus communis]
18 Hb_062226_130 0.0628624457 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
19 Hb_164390_010 0.0643204274 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
20 Hb_001456_060 0.0643574869 - - hypothetical protein JCGZ_17090 [Jatropha curcas]

Gene co-expression network

sample Hb_003428_010 Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_004052_080--Hb_003861_060 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_007007_120--Hb_000339_040 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_000313_220 Hb_000313_220 Hb_002849_130--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_002849_130--Hb_000976_140 Hb_005730_040 Hb_005730_040 Hb_002849_130--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_002849_130--Hb_093458_040 Hb_015807_050 Hb_015807_050 Hb_002849_130--Hb_015807_050 Hb_003861_060--Hb_014834_150 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_014834_150--Hb_004052_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87199 8.09371 9.22385 7.71121 6.15654 6.63601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.50342 8.66009 7.85092 7.16707 8.97548

CAGE analysis