Hb_164390_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig164390: 5222-18662
Sequence    

Annotation

kegg
ID rcu:RCOM_1316780
description DNA-binding protein EMBP-1, putative
nr
ID XP_012080771.1
description PREDICTED: transcription factor HBP-1a [Jatropha curcas]
swissprot
ID P23922
description Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1
trembl
ID A0A067KFY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15542 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor hbp-1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15104: 5526-18617 , PASA_asmbl_15105: 9716-9964 , PASA_asmbl_15108: 15574-15782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164390_010 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
2 Hb_000365_230 0.0498340421 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
3 Hb_007894_150 0.0513838038 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
4 Hb_163175_010 0.0537874989 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
5 Hb_002400_340 0.0541750518 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_004109_320 0.0561455802 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
7 Hb_171900_090 0.0573627214 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003861_060 0.0573790489 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_000392_420 0.0589334711 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
10 Hb_000778_010 0.0589404626 - - hypothetical protein [Bacillus subtilis]
11 Hb_001359_050 0.0595129948 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000173_280 0.0598723802 - - Speckle-type POZ protein, putative [Ricinus communis]
13 Hb_003428_010 0.0643204274 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
14 Hb_002986_100 0.0648342503 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
15 Hb_014834_150 0.0650638603 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000359_040 0.0661467364 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002936_010 0.0667480865 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
18 Hb_183433_010 0.0676351302 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_001720_040 0.0676491991 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001221_110 0.0677426739 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]

Gene co-expression network

sample Hb_164390_010 Hb_164390_010 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_000365_230--Hb_004109_320 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_007894_150--Hb_004109_320 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_002400_340--Hb_004109_320 Hb_000339_040 Hb_000339_040 Hb_002400_340--Hb_000339_040 Hb_002400_340--Hb_163175_010 Hb_001456_060 Hb_001456_060 Hb_002400_340--Hb_001456_060 Hb_002400_340--Hb_171900_090 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7415 19.3764 23.8847 19.5461 13.6521 14.7595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6875 21.5736 14.3737 21.6193 16.7063

CAGE analysis