Hb_171900_090

Information

Type -
Description -
Location Contig171900: 26436-29851
Sequence    

Annotation

kegg
ID rcu:RCOM_1608840
description hypothetical protein
nr
ID XP_002511610.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P57724
description Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=2 SV=1
trembl
ID B9RD21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1608840 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16109: 27543-27972 , PASA_asmbl_16110: 26688-29260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000789_320 0.0528502084 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
3 Hb_164390_010 0.0573627214 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
4 Hb_183433_010 0.0580166537 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
5 Hb_002272_050 0.0580596933 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
6 Hb_000176_020 0.0589447763 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
7 Hb_001025_090 0.0596363191 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
8 Hb_163175_010 0.0597855866 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
9 Hb_003861_060 0.0620427499 - - PREDICTED: treacle protein [Jatropha curcas]
10 Hb_002014_010 0.06355348 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_004109_320 0.0637578906 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_000339_040 0.0641640209 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
13 Hb_000365_230 0.0644974255 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
14 Hb_001623_270 0.0654361636 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_000336_210 0.0662921807 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
16 Hb_014834_150 0.0674493658 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000359_040 0.06774387 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001221_440 0.0689214098 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
19 Hb_000019_190 0.0690357182 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
20 Hb_000875_080 0.0693756237 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_171900_090 Hb_171900_090 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_183433_010--Hb_000365_230 Hb_000875_080 Hb_000875_080 Hb_002272_050--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160 Hb_000176_020--Hb_001623_270 Hb_000176_020--Hb_001025_090 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000176_020--Hb_000789_320 Hb_004807_020 Hb_004807_020 Hb_001025_090--Hb_004807_020 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54807 9.53515 15.3604 10.2847 7.46813 7.35784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.27354 11.2069 5.63405 9.27053 8.03276

CAGE analysis