Hb_001153_210

Information

Type -
Description -
Location Contig1153: 169413-177493
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08680g
description POPTRDRAFT_751389; hypothetical protein
nr
ID XP_012087011.1
description PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K141
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20675 PE=4 SV=1
Gene Ontology
ID GO:0046907
description nuclear pore complex protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04629: 169524-173036 , PASA_asmbl_04630: 173219-177415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_210 0.0 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
2 Hb_138435_010 0.0529780313 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_002986_100 0.0612319041 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
4 Hb_005867_070 0.0634544409 - - DNA binding protein, putative [Ricinus communis]
5 Hb_003861_050 0.0635194628 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
6 Hb_004020_040 0.0639539835 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
7 Hb_000339_040 0.0659471626 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_000120_210 0.0662518049 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
9 Hb_000789_320 0.0663588058 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
10 Hb_000260_680 0.0666002128 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
11 Hb_000390_230 0.0671942734 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_004994_010 0.0672359064 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
13 Hb_000331_110 0.0682507189 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
14 Hb_008059_010 0.0696596293 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
15 Hb_001226_150 0.0698655946 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
16 Hb_031284_010 0.0699743076 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
17 Hb_000847_080 0.0711958041 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
18 Hb_007590_020 0.0712852207 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
19 Hb_000416_110 0.0714838391 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
20 Hb_002889_010 0.0718505737 - - ubx domain-containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_001153_210 Hb_001153_210 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_003186_020 Hb_003186_020 Hb_138435_010--Hb_003186_020 Hb_031284_010 Hb_031284_010 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_032202_080 Hb_032202_080 Hb_138435_010--Hb_032202_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150 Hb_001720_040 Hb_001720_040 Hb_002986_100--Hb_001720_040 Hb_000976_140 Hb_000976_140 Hb_002986_100--Hb_000976_140 Hb_002986_100--Hb_005867_070 Hb_014834_150 Hb_014834_150 Hb_002986_100--Hb_014834_150 Hb_001456_060 Hb_001456_060 Hb_002986_100--Hb_001456_060 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_005867_070--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_000339_040--Hb_004837_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65252 9.9771 16.2626 8.86202 10.9126 11.0554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95202 9.39798 5.65696 8.92844 10.7788

CAGE analysis