Hb_000035_110

Information

Type -
Description -
Location Contig35: 165366-174701
Sequence    

Annotation

kegg
ID rcu:RCOM_0921590
description protein with unknown function (EC:2.7.11.7)
nr
ID XP_012076440.1
description PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
swissprot
ID Q6S7B0
description Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1
trembl
ID A0A067KET0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07094 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36402: 165748-172151 , PASA_asmbl_36403: 165500-174582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_110 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
2 Hb_001377_310 0.0474938008 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
3 Hb_000005_220 0.0589235925 - - DNA ligase 1, partial [Glycine soja]
4 Hb_004020_040 0.0593991075 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
5 Hb_001635_160 0.0610885774 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
6 Hb_005460_050 0.0615553452 - - COR413-PM2, putative [Ricinus communis]
7 Hb_010150_020 0.06414981 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
8 Hb_002398_030 0.0647491226 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_007441_020 0.0648206015 - - Rab6 [Hevea brasiliensis]
10 Hb_002073_190 0.0667802134 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
11 Hb_003861_050 0.0676109396 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
12 Hb_002272_130 0.0682448687 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
13 Hb_000170_090 0.0693542249 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
14 Hb_008120_030 0.0707927424 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
15 Hb_183612_040 0.0735638909 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
16 Hb_105328_020 0.0736387501 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_000345_380 0.073824095 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_001635_040 0.0739875349 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
19 Hb_003878_110 0.0746645263 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
20 Hb_008568_020 0.0749257654 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000035_110 Hb_000035_110 Hb_001377_310 Hb_001377_310 Hb_000035_110--Hb_001377_310 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_001635_160--Hb_005460_050 Hb_008120_030 Hb_008120_030 Hb_001635_160--Hb_008120_030 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001635_160--Hb_001377_310 Hb_002398_030 Hb_002398_030 Hb_001635_160--Hb_002398_030 Hb_032990_010 Hb_032990_010 Hb_005460_050--Hb_032990_010 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_010150_020--Hb_001377_310 Hb_003688_090 Hb_003688_090 Hb_010150_020--Hb_003688_090 Hb_010150_020--Hb_021374_010 Hb_029904_020 Hb_029904_020 Hb_010150_020--Hb_029904_020 Hb_010150_020--Hb_004020_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81704 5.19463 7.17453 6.2191 5.12487 8.16386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37614 4.1899 3.14515 4.9315 4.82935

CAGE analysis