Hb_007441_020

Information

Type -
Description -
Location Contig7441: 19967-24863
Sequence    

Annotation

kegg
ID cit:102624523
description ras-related protein RABD2a-like
nr
ID AGL52581.1
description Rab6 [Hevea brasiliensis]
swissprot
ID P28188
description Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3
trembl
ID A0A023HJ72
description Rab6 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56587: 19990-24241 , PASA_asmbl_56589: 7159-31700
cDNA
(Sanger)
(ID:Location)		 010_E07r.ab1: 7511-31585 , 011_J16.ab1: 20285-24241 , 047_C17.ab1: 20318-24241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_020 0.0 - - Rab6 [Hevea brasiliensis]
2 Hb_106552_020 0.060043012 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
3 Hb_000866_310 0.0625589318 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
4 Hb_000035_110 0.0648206015 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
5 Hb_008568_020 0.0653888017 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
6 Hb_000005_220 0.0658703319 - - DNA ligase 1, partial [Glycine soja]
7 Hb_000239_060 0.0695997778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003096_060 0.0739550196 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_000416_110 0.0754435283 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
10 Hb_001377_310 0.0757984435 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
11 Hb_000260_680 0.0761562792 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
12 Hb_006588_070 0.0779692942 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_004020_040 0.0781169419 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
14 Hb_002615_120 0.079671235 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_154580_010 0.0799756293 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
16 Hb_002445_100 0.0809580345 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
17 Hb_000776_100 0.0810021296 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
18 Hb_001153_210 0.0816341494 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
19 Hb_007062_040 0.0821218934 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
20 Hb_001751_140 0.0826054892 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_020 Hb_007441_020 Hb_106552_020 Hb_106552_020 Hb_007441_020--Hb_106552_020 Hb_000866_310 Hb_000866_310 Hb_007441_020--Hb_000866_310 Hb_000035_110 Hb_000035_110 Hb_007441_020--Hb_000035_110 Hb_008568_020 Hb_008568_020 Hb_007441_020--Hb_008568_020 Hb_000005_220 Hb_000005_220 Hb_007441_020--Hb_000005_220 Hb_000239_060 Hb_000239_060 Hb_007441_020--Hb_000239_060 Hb_000163_220 Hb_000163_220 Hb_106552_020--Hb_000163_220 Hb_106552_020--Hb_000005_220 Hb_005779_010 Hb_005779_010 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000731_220 Hb_000731_220 Hb_106552_020--Hb_000731_220 Hb_000789_320 Hb_000789_320 Hb_000866_310--Hb_000789_320 Hb_004994_010 Hb_004994_010 Hb_000866_310--Hb_004994_010 Hb_000260_680 Hb_000260_680 Hb_000866_310--Hb_000260_680 Hb_000416_110 Hb_000416_110 Hb_000866_310--Hb_000416_110 Hb_002445_100 Hb_002445_100 Hb_000866_310--Hb_002445_100 Hb_001377_310 Hb_001377_310 Hb_000035_110--Hb_001377_310 Hb_000035_110--Hb_000005_220 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_000005_220--Hb_002445_100 Hb_000005_220--Hb_005779_010 Hb_000352_350 Hb_000352_350 Hb_000239_060--Hb_000352_350 Hb_001751_140 Hb_001751_140 Hb_000239_060--Hb_001751_140 Hb_001776_060 Hb_001776_060 Hb_000239_060--Hb_001776_060 Hb_007290_030 Hb_007290_030 Hb_000239_060--Hb_007290_030 Hb_006588_070 Hb_006588_070 Hb_000239_060--Hb_006588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9715 31.6418 51.2759 29.4922 23.9928 40.0097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3297 24.2815 14.3186 28.0571 21.6413

CAGE analysis