Hb_000163_220

Information

Type -
Description -
Location Contig163: 145892-152071
Sequence    

Annotation

kegg
ID cic:CICLE_v10021764mg
description hypothetical protein
nr
ID KDO87243.1
description hypothetical protein CISIN_1g022301mg [Citrus sinensis]
swissprot
ID O22315
description Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1
trembl
ID A0A0D2SCC4
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G128300 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pre-mrna-splicing factor sf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14826: 145989-149619 , PASA_asmbl_14827: 145683-149619 , PASA_asmbl_14828: 145627-152254 , PASA_asmbl_14829: 150609-150790
cDNA
(Sanger)
(ID:Location)		 025_K10.ab1: 145683-148724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_220 0.0 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
2 Hb_106552_020 0.0618830741 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
3 Hb_005779_010 0.0630555432 - - catalytic, putative [Ricinus communis]
4 Hb_028872_090 0.0641460514 - - PREDICTED: urease [Jatropha curcas]
5 Hb_005588_090 0.0667787662 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
6 Hb_005289_040 0.0678624764 - - poly(A) polymerase, putative [Ricinus communis]
7 Hb_002889_010 0.0708711893 - - ubx domain-containing, putative [Ricinus communis]
8 Hb_000089_120 0.0722240267 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000020_150 0.0733336893 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
10 Hb_003861_050 0.0740789696 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
11 Hb_004994_010 0.0748531209 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
12 Hb_007657_020 0.0755320563 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
13 Hb_000302_310 0.0759008647 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_000126_010 0.0781237756 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
15 Hb_000120_280 0.0786175702 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_000803_270 0.0794283087 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
17 Hb_002681_090 0.0797960738 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_016777_040 0.0804842494 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
19 Hb_005618_050 0.0809635526 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
20 Hb_000005_220 0.0813920813 - - DNA ligase 1, partial [Glycine soja]

Gene co-expression network

sample Hb_000163_220 Hb_000163_220 Hb_106552_020 Hb_106552_020 Hb_000163_220--Hb_106552_020 Hb_005779_010 Hb_005779_010 Hb_000163_220--Hb_005779_010 Hb_028872_090 Hb_028872_090 Hb_000163_220--Hb_028872_090 Hb_005588_090 Hb_005588_090 Hb_000163_220--Hb_005588_090 Hb_005289_040 Hb_005289_040 Hb_000163_220--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000163_220--Hb_002889_010 Hb_007441_020 Hb_007441_020 Hb_106552_020--Hb_007441_020 Hb_000005_220 Hb_000005_220 Hb_106552_020--Hb_000005_220 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000731_220 Hb_000731_220 Hb_106552_020--Hb_000731_220 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_005779_010--Hb_002445_100 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_005779_010--Hb_000005_220 Hb_002784_020 Hb_002784_020 Hb_028872_090--Hb_002784_020 Hb_000020_150 Hb_000020_150 Hb_028872_090--Hb_000020_150 Hb_063716_100 Hb_063716_100 Hb_028872_090--Hb_063716_100 Hb_000089_120 Hb_000089_120 Hb_028872_090--Hb_000089_120 Hb_028872_090--Hb_003861_050 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_005289_040--Hb_154580_010 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_002889_010--Hb_000816_250 Hb_002889_010--Hb_000134_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.003 15.6462 21.7871 17.2406 18.204 16.9567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8677 15.494 7.92794 23.0634 10.485

CAGE analysis