Hb_000398_080

Information

Type -
Description -
Location Contig398: 134080-146242
Sequence    

Annotation

kegg
ID rcu:RCOM_0495920
description tip120, putative
nr
ID XP_002527826.1
description tip120, putative [Ricinus communis]
swissprot
ID Q8L5Y6
description Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1
trembl
ID B9SPA7
description Tip120, putative OS=Ricinus communis GN=RCOM_0495920 PE=4 SV=1
Gene Ontology
ID GO:0005618
description cullin-associated nedd8-dissociated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39661: 134324-145168 , PASA_asmbl_39664: 145983-146176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_080 0.0 - - tip120, putative [Ricinus communis]
2 Hb_007657_020 0.0461781073 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
3 Hb_002805_190 0.0469328932 - - spliceosome associated protein, putative [Ricinus communis]
4 Hb_000011_100 0.0502174685 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
5 Hb_000603_030 0.0528627955 - - Ribonuclease III, putative [Ricinus communis]
6 Hb_004267_040 0.0586951249 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
7 Hb_000563_130 0.0591844314 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
8 Hb_000174_060 0.0605706099 - - zinc finger family protein [Populus trichocarpa]
9 Hb_005289_040 0.0616782815 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_000227_220 0.0617134287 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
11 Hb_003943_010 0.0627797563 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001430_080 0.063217617 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
13 Hb_001377_160 0.0647237812 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
14 Hb_000879_040 0.065412086 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_028872_070 0.0662134761 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
16 Hb_000089_120 0.0663620833 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_005402_040 0.0679172693 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
18 Hb_000120_280 0.0680866473 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_001814_030 0.0687444325 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_000261_240 0.0695489896 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]

Gene co-expression network

sample Hb_000398_080 Hb_000398_080 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000603_030 Hb_000603_030 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_007657_020--Hb_000603_030 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_005289_040 Hb_005289_040 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000011_100--Hb_000563_130 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000603_030--Hb_002681_090 Hb_000603_030--Hb_000563_130 Hb_000603_030--Hb_004267_040 Hb_004267_040--Hb_000120_280 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1032 20.1085 18.4914 14.3431 18.2922 19.3371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4141 9.87279 9.3776 20.7911 15.0278

CAGE analysis