Hb_000261_240

Information

Type -
Description -
Location Contig261: 189167-200193
Sequence    

Annotation

kegg
ID csv:101220517
description uncharacterized LOC101220517
nr
ID O49169.1
description RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
swissprot
ID O49169
description Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1
trembl
ID A0A0D3FEJ1
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27272: 188283-191079 , PASA_asmbl_27273: 188655-189136 , PASA_asmbl_27274: 188340-188440 , PASA_asmbl_27275: 195399-198209 , PASA_asmbl_27276: 196366-196875 , PASA_asmbl_27277: 195451-195626
cDNA
(Sanger)
(ID:Location)		 009_C20.ab1: 195447-196047 , 009_C22.ab1: 188283-190110 , 015_B01.ab1: 188283-190068 , 015_J06.ab1: 188283-190041 , 017_F12.ab1: 188283-190107 , 022_P10.ab1: 195392-197253 , 033_B21.ab1: 195392-197233 , 034_B10.ab1: 195399-197247 , 036_K20.ab1: 188278-190111 , 040_J23.ab1: 188278-190122 , 043_K07.ab1: 195399-197164 , 051_N16.ab1: 188283-190059 , 052_H14.ab1: 195399-197114 , 053_J19.ab1: 188283-190149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_240 0.0 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
2 Hb_007657_020 0.0474741017 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
3 Hb_000089_120 0.0622459978 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_002311_290 0.0692523297 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
5 Hb_000398_080 0.0695489896 - - tip120, putative [Ricinus communis]
6 Hb_005460_050 0.0749050264 - - COR413-PM2, putative [Ricinus communis]
7 Hb_005723_020 0.0754201961 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001085_110 0.0767734741 - - T6D22.2 [Arabidopsis thaliana]
9 Hb_002681_090 0.0776700552 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
10 Hb_008226_090 0.0777178994 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
11 Hb_006355_090 0.0789090146 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
12 Hb_002686_040 0.078967538 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
13 Hb_000174_060 0.0796321371 - - zinc finger family protein [Populus trichocarpa]
14 Hb_000182_040 0.0805110343 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
15 Hb_004109_370 0.0809025842 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000011_100 0.0820479529 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
17 Hb_000120_280 0.0827661255 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
18 Hb_000227_220 0.0830384092 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
19 Hb_003464_080 0.0832287399 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
20 Hb_140049_080 0.0835577642 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_240 Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000261_240--Hb_007657_020 Hb_000089_120 Hb_000089_120 Hb_000261_240--Hb_000089_120 Hb_002311_290 Hb_002311_290 Hb_000261_240--Hb_002311_290 Hb_000398_080 Hb_000398_080 Hb_000261_240--Hb_000398_080 Hb_005460_050 Hb_005460_050 Hb_000261_240--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_000261_240--Hb_005723_020 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_007657_020--Hb_000089_120 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000089_120--Hb_000398_080 Hb_002311_290--Hb_002681_090 Hb_002311_290--Hb_000603_030 Hb_001062_010 Hb_001062_010 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_032990_010 Hb_032990_010 Hb_005460_050--Hb_032990_010 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_005723_020--Hb_000933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.516 184.847 160.721 191.179 182.502 216.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.0716 118.155 85.4273 205.916 115.164

CAGE analysis