Hb_001062_010

Information

Type -
Description -
Location Contig1062: 7354-14832
Sequence    

Annotation

kegg
ID rcu:RCOM_1028070
description nucleic acid binding protein, putative
nr
ID XP_012077540.1
description PREDICTED: CWF19-like protein 2 [Jatropha curcas]
swissprot
ID Q8BG79
description CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1
trembl
ID A0A067LB05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17258 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cwf19-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02002: 7276-7989 , PASA_asmbl_02003: 7456-7747 , PASA_asmbl_02004: 7999-14558 , PASA_asmbl_02005: 13290-13430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001062_010 0.0 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
2 Hb_000900_030 0.0494022671 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
3 Hb_009976_020 0.0584470478 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
4 Hb_001343_040 0.0623601552 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
5 Hb_002311_290 0.0636671781 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
6 Hb_002815_030 0.0639435064 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
7 Hb_009175_020 0.0646139139 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
8 Hb_001814_030 0.0661098122 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
9 Hb_002092_130 0.06613209 - - PREDICTED: protein CASP-like [Oryza brachyantha]
10 Hb_000740_100 0.0677438289 - - calpain, putative [Ricinus communis]
11 Hb_009270_020 0.0684582711 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
12 Hb_012760_100 0.0687079377 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
13 Hb_000395_070 0.0700924547 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
14 Hb_056691_060 0.0705179126 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
15 Hb_009486_180 0.0714148104 - - unknown [Glycine max]
16 Hb_003734_010 0.072521575 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
17 Hb_002631_170 0.0729128808 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
18 Hb_000603_030 0.0753496186 - - Ribonuclease III, putative [Ricinus communis]
19 Hb_005402_040 0.0756908142 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
20 Hb_003645_060 0.0757100829 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001062_010 Hb_001062_010 Hb_000900_030 Hb_000900_030 Hb_001062_010--Hb_000900_030 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002311_290 Hb_002311_290 Hb_001062_010--Hb_002311_290 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_009175_020 Hb_009175_020 Hb_001062_010--Hb_009175_020 Hb_000900_030--Hb_009175_020 Hb_009486_180 Hb_009486_180 Hb_000900_030--Hb_009486_180 Hb_000441_120 Hb_000441_120 Hb_000900_030--Hb_000441_120 Hb_004267_040 Hb_004267_040 Hb_000900_030--Hb_004267_040 Hb_000011_230 Hb_000011_230 Hb_000900_030--Hb_000011_230 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_012760_100 Hb_012760_100 Hb_009976_020--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_003734_010 Hb_003734_010 Hb_009976_020--Hb_003734_010 Hb_001343_040--Hb_002815_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_000592_030 Hb_000592_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_007657_020 Hb_007657_020 Hb_002311_290--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_002311_290--Hb_002681_090 Hb_000603_030 Hb_000603_030 Hb_002311_290--Hb_000603_030 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_002311_290--Hb_000227_220 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_002815_030--Hb_012395_140 Hb_002815_030--Hb_000395_070 Hb_002815_030--Hb_000592_030 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8843 12.9988 9.41159 10.7386 17.8147 15.5646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.6941 9.49611 9.03339 20.7408 16.5719

CAGE analysis