Hb_000227_220

Information

Type -
Description -
Location Contig227: 191597-198076
Sequence    

Annotation

kegg
ID rcu:RCOM_0913790
description kinase associated protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012069570.1
description PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
swissprot
ID P46014
description Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2
trembl
ID A0A067L7S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02137 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein phosphatase 2c 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23618: 191520-193004 , PASA_asmbl_23619: 195391-195497 , PASA_asmbl_23620: 197176-197937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_220 0.0 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
2 Hb_009976_020 0.0559397827 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
3 Hb_001814_030 0.0564960999 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
4 Hb_000710_040 0.0582801378 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
5 Hb_003943_010 0.0603270179 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001089_030 0.0609112783 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
7 Hb_004020_040 0.0613022738 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
8 Hb_003517_040 0.0615472398 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
9 Hb_000398_080 0.0617134287 - - tip120, putative [Ricinus communis]
10 Hb_000011_100 0.0632644964 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
11 Hb_000563_130 0.0641379853 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
12 Hb_003734_010 0.0645930882 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
13 Hb_012760_100 0.0650165845 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
14 Hb_021374_010 0.0651084075 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
15 Hb_014361_070 0.0657123701 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_007657_020 0.0666297724 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
17 Hb_002311_290 0.0672715224 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
18 Hb_005867_070 0.0675640444 - - DNA binding protein, putative [Ricinus communis]
19 Hb_011231_020 0.0693535727 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
20 Hb_002681_090 0.0703506638 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_220 Hb_000227_220 Hb_009976_020 Hb_009976_020 Hb_000227_220--Hb_009976_020 Hb_001814_030 Hb_001814_030 Hb_000227_220--Hb_001814_030 Hb_000710_040 Hb_000710_040 Hb_000227_220--Hb_000710_040 Hb_003943_010 Hb_003943_010 Hb_000227_220--Hb_003943_010 Hb_001089_030 Hb_001089_030 Hb_000227_220--Hb_001089_030 Hb_004020_040 Hb_004020_040 Hb_000227_220--Hb_004020_040 Hb_011231_020 Hb_011231_020 Hb_009976_020--Hb_011231_020 Hb_012760_100 Hb_012760_100 Hb_009976_020--Hb_012760_100 Hb_009976_020--Hb_001814_030 Hb_003734_010 Hb_003734_010 Hb_009976_020--Hb_003734_010 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_000710_040--Hb_001089_030 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_003943_010--Hb_159558_010 Hb_007590_020 Hb_007590_020 Hb_001089_030--Hb_007590_020 Hb_001720_040 Hb_001720_040 Hb_001089_030--Hb_001720_040 Hb_001089_030--Hb_004020_040 Hb_004837_180 Hb_004837_180 Hb_001089_030--Hb_004837_180 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_001377_310 Hb_001377_310 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82889 3.53695 2.92755 3.13179 3.60415 3.90455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22964 2.5118 1.73377 3.42187 3.77937

CAGE analysis