Hb_001720_040

Information

Type -
Description -
Location Contig1720: 36365-58746
Sequence    

Annotation

kegg
ID rcu:RCOM_0068890
description hypothetical protein
nr
ID XP_002533049.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5SPP5
description Protein EFR3 homolog B OS=Danio rerio GN=efr3b PE=3 SV=2
trembl
ID B9T480
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0068890 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arm repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16210: 57824-58641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001720_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002986_100 0.0518868794 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
3 Hb_005867_070 0.0588576694 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001089_030 0.0610647007 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
5 Hb_004837_180 0.0639989439 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000710_040 0.0641792928 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
7 Hb_007590_020 0.0665645607 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
8 Hb_164390_010 0.0676491991 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
9 Hb_000087_060 0.0686031111 - - protein transporter, putative [Ricinus communis]
10 Hb_000803_270 0.0698168428 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
11 Hb_000111_170 0.0702189562 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
12 Hb_183510_020 0.0709906989 - - coated vesicle membrane protein, putative [Ricinus communis]
13 Hb_000363_310 0.0709956688 - - DNA topoisomerase type I, putative [Ricinus communis]
14 Hb_000189_600 0.0710662574 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
15 Hb_183433_010 0.0710729716 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_004994_010 0.0717542476 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
17 Hb_000976_140 0.0726848315 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
18 Hb_001153_210 0.0729265491 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
19 Hb_000359_040 0.0731380001 - - conserved hypothetical protein [Ricinus communis]
20 Hb_057688_010 0.0733248487 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001720_040 Hb_001720_040 Hb_002986_100 Hb_002986_100 Hb_001720_040--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001720_040--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_001720_040--Hb_001089_030 Hb_004837_180 Hb_004837_180 Hb_001720_040--Hb_004837_180 Hb_000710_040 Hb_000710_040 Hb_001720_040--Hb_000710_040 Hb_007590_020 Hb_007590_020 Hb_001720_040--Hb_007590_020 Hb_000976_140 Hb_000976_140 Hb_002986_100--Hb_000976_140 Hb_002986_100--Hb_005867_070 Hb_014834_150 Hb_014834_150 Hb_002986_100--Hb_014834_150 Hb_001153_210 Hb_001153_210 Hb_002986_100--Hb_001153_210 Hb_001456_060 Hb_001456_060 Hb_002986_100--Hb_001456_060 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_001089_030--Hb_000710_040 Hb_001089_030--Hb_007590_020 Hb_000227_220 Hb_000227_220 Hb_001089_030--Hb_000227_220 Hb_004020_040 Hb_004020_040 Hb_001089_030--Hb_004020_040 Hb_001089_030--Hb_004837_180 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_007590_020--Hb_004236_050 Hb_007590_020--Hb_005730_040 Hb_007590_020--Hb_001225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22986 8.50818 8.44302 6.38013 6.90184 6.03621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25704 7.0042 3.92406 6.89654 6.60988

CAGE analysis