Hb_002986_100

Information

Type -
Description -
Location Contig2986: 81599-90502
Sequence    

Annotation

kegg
ID rcu:RCOM_1407200
description hypothetical protein
nr
ID XP_012079208.1
description PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K725
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12373 PE=4 SV=1
Gene Ontology
ID GO:0006810
description PREDICTED: uncharacterized protein LOC105639686

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31195: 84282-84584 , PASA_asmbl_31196: 87206-90445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_100 0.0 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
2 Hb_001720_040 0.0518868794 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000976_140 0.0563673358 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
4 Hb_005867_070 0.0565376534 - - DNA binding protein, putative [Ricinus communis]
5 Hb_014834_150 0.0610508816 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001153_210 0.0612319041 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
7 Hb_001456_060 0.0623964552 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
8 Hb_003549_160 0.0646552969 - - Protein FAM18B, putative [Ricinus communis]
9 Hb_164390_010 0.0648342503 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
10 Hb_003861_050 0.0658970012 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
11 Hb_000035_470 0.0660234191 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
12 Hb_005730_040 0.066797123 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
13 Hb_183433_010 0.0674520705 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
14 Hb_163175_010 0.068477665 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
15 Hb_001959_110 0.068607252 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
16 Hb_171900_090 0.0694060344 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_800 0.0698344373 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000339_040 0.0700708675 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
19 Hb_004020_040 0.0702436478 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
20 Hb_003938_090 0.0703706796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002986_100 Hb_002986_100 Hb_001720_040 Hb_001720_040 Hb_002986_100--Hb_001720_040 Hb_000976_140 Hb_000976_140 Hb_002986_100--Hb_000976_140 Hb_005867_070 Hb_005867_070 Hb_002986_100--Hb_005867_070 Hb_014834_150 Hb_014834_150 Hb_002986_100--Hb_014834_150 Hb_001153_210 Hb_001153_210 Hb_002986_100--Hb_001153_210 Hb_001456_060 Hb_001456_060 Hb_002986_100--Hb_001456_060 Hb_001720_040--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_001720_040--Hb_001089_030 Hb_004837_180 Hb_004837_180 Hb_001720_040--Hb_004837_180 Hb_000710_040 Hb_000710_040 Hb_001720_040--Hb_000710_040 Hb_007590_020 Hb_007590_020 Hb_001720_040--Hb_007590_020 Hb_005730_040 Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_000976_140--Hb_000313_220 Hb_002849_130 Hb_002849_130 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_005867_070--Hb_004837_180 Hb_005867_070--Hb_005730_040 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_001153_210--Hb_005867_070 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_001153_210--Hb_000339_040 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_001456_060--Hb_002876_230 Hb_001456_060--Hb_005867_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87874 2.66402 3.50167 2.73266 2.63124 3.07167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27451 3.14532 1.68265 2.72178 2.54847

CAGE analysis