Hb_004994_010

Information

Type -
Description -
Location Contig4994: 3001-7087
Sequence    

Annotation

kegg
ID rcu:RCOM_1613810
description cop9 signalosome complex subunit, putative
nr
ID XP_012083472.1
description PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
swissprot
ID P45432
description COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2
trembl
ID A0A067KA51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14455 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cop9 signalosome complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45615: 3049-7086
cDNA
(Sanger)
(ID:Location)		 027_J22.ab1: 3063-4721

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_010 0.0 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
2 Hb_003861_050 0.0475862382 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
3 Hb_000390_230 0.051804851 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
4 Hb_001456_060 0.0537956222 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
5 Hb_000359_040 0.0543695791 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010407_050 0.0578534011 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
7 Hb_000339_040 0.0602894339 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_005867_070 0.0607600067 - - DNA binding protein, putative [Ricinus communis]
9 Hb_006688_050 0.0622354208 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
10 Hb_000935_010 0.0625105995 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
11 Hb_005779_010 0.0626880836 - - catalytic, putative [Ricinus communis]
12 Hb_154580_010 0.0671992918 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
13 Hb_001153_210 0.0672359064 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
14 Hb_000260_680 0.0686044546 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
15 Hb_001226_150 0.0687850549 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
16 Hb_002876_230 0.0688094862 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
17 Hb_000011_100 0.0694031589 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
18 Hb_001408_140 0.0702189695 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
19 Hb_005289_040 0.0702313448 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_003927_040 0.0708086946 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_010 Hb_004994_010 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_000836_410 Hb_000836_410 Hb_000390_230--Hb_000836_410 Hb_000115_280 Hb_000115_280 Hb_000390_230--Hb_000115_280 Hb_000567_070 Hb_000567_070 Hb_000390_230--Hb_000567_070 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_138435_010 Hb_138435_010 Hb_000390_230--Hb_138435_010 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_001456_060--Hb_000339_040 Hb_004052_080 Hb_004052_080 Hb_001456_060--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_001456_060--Hb_002876_230 Hb_001456_060--Hb_005867_070 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001789_060 Hb_001789_060 Hb_000359_040--Hb_001789_060 Hb_000359_040--Hb_001456_060 Hb_002272_050 Hb_002272_050 Hb_000359_040--Hb_002272_050 Hb_000359_040--Hb_000339_040 Hb_006688_050 Hb_006688_050 Hb_010407_050--Hb_006688_050 Hb_001488_200 Hb_001488_200 Hb_010407_050--Hb_001488_200 Hb_000879_180 Hb_000879_180 Hb_010407_050--Hb_000879_180 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_002876_230 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_000339_040--Hb_005867_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8413 26.1855 36.0473 19.949 26.9598 23.9657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2504 22.7284 18.2921 27.4543 19.3297

CAGE analysis