Hb_001789_060

Information

Type -
Description -
Location Contig1789: 76973-82715
Sequence    

Annotation

kegg
ID rcu:RCOM_1583280
description calmodulin-binding heat-shock protein, putative
nr
ID XP_002513688.1
description calmodulin-binding heat-shock protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIW9
description Calmodulin-binding heat-shock protein, putative OS=Ricinus communis GN=RCOM_1583280 PE=4 SV=1
Gene Ontology
ID GO:0016787
description calmodulin-binding heat-shock

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17197: 76976-77450 , PASA_asmbl_17198: 77642-82815 , PASA_asmbl_17200: 78845-79711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_060 0.0 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
2 Hb_000359_040 0.0621280748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001722_120 0.0628467507 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
4 Hb_001279_170 0.0713369682 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
5 Hb_004994_010 0.078597654 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
6 Hb_000617_230 0.0798371982 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
7 Hb_002445_100 0.0815927098 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
8 Hb_000077_320 0.0857341599 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
9 Hb_001981_030 0.0858494804 - - nuclear acid binding protein, putative [Ricinus communis]
10 Hb_001862_210 0.0880791199 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
11 Hb_000484_130 0.089951418 - - splicing factor, putative [Ricinus communis]
12 Hb_005779_010 0.0902735457 - - catalytic, putative [Ricinus communis]
13 Hb_001878_050 0.0915879225 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
14 Hb_001359_050 0.0916831274 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006588_210 0.0917426969 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_000339_040 0.0934112667 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_002686_170 0.0935316485 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
18 Hb_001456_060 0.0953875779 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
19 Hb_001226_150 0.096233968 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
20 Hb_010775_030 0.0971283689 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]

Gene co-expression network

sample Hb_001789_060 Hb_001789_060 Hb_000359_040 Hb_000359_040 Hb_001789_060--Hb_000359_040 Hb_001722_120 Hb_001722_120 Hb_001789_060--Hb_001722_120 Hb_001279_170 Hb_001279_170 Hb_001789_060--Hb_001279_170 Hb_004994_010 Hb_004994_010 Hb_001789_060--Hb_004994_010 Hb_000617_230 Hb_000617_230 Hb_001789_060--Hb_000617_230 Hb_002445_100 Hb_002445_100 Hb_001789_060--Hb_002445_100 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_002272_050 Hb_002272_050 Hb_000359_040--Hb_002272_050 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_001722_120--Hb_000359_040 Hb_001722_120--Hb_002445_100 Hb_001722_120--Hb_004994_010 Hb_001722_120--Hb_002272_050 Hb_000077_320 Hb_000077_320 Hb_001722_120--Hb_000077_320 Hb_001279_170--Hb_000617_230 Hb_000484_130 Hb_000484_130 Hb_001279_170--Hb_000484_130 Hb_000291_010 Hb_000291_010 Hb_001279_170--Hb_000291_010 Hb_001862_210 Hb_001862_210 Hb_001279_170--Hb_001862_210 Hb_002675_130 Hb_002675_130 Hb_001279_170--Hb_002675_130 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_004994_010--Hb_001456_060 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_001878_050 Hb_001878_050 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_005779_010 Hb_005779_010 Hb_002445_100--Hb_005779_010 Hb_000005_220 Hb_000005_220 Hb_002445_100--Hb_000005_220 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83285 5.46488 7.12756 3.1143 3.77756 3.15924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25901 3.94912 3.82958 5.13401 2.56807

CAGE analysis