Hb_001279_170

Information

Type -
Description -
Location Contig1279: 163784-166429
Sequence    

Annotation

kegg
ID rcu:RCOM_0530950
description succinate dehydrogenase, putative (EC:1.3.5.1)
nr
ID XP_012071382.1
description PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LB02
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2
trembl
ID A0A067LPB8
description Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Jatropha curcas GN=JCGZ_10199 PE=3 SV=1
Gene Ontology
ID GO:0005749
description succinate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08595: 163753-166459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_170 0.0 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
2 Hb_000617_230 0.0712658511 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
3 Hb_001789_060 0.0713369682 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
4 Hb_000484_130 0.0875369471 - - splicing factor, putative [Ricinus communis]
5 Hb_000291_010 0.0880412099 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_001862_210 0.0912002501 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
7 Hb_002675_130 0.0923419438 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
8 Hb_001878_050 0.092978531 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
9 Hb_000565_040 0.0941710955 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_003528_050 0.0992391289 - - protein transporter, putative [Ricinus communis]
11 Hb_001300_010 0.099717851 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
12 Hb_022256_020 0.099814706 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
13 Hb_050847_050 0.10105077 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
14 Hb_142321_010 0.1010700201 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
15 Hb_010775_030 0.1017805346 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
16 Hb_001104_170 0.1023677444 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
17 Hb_000359_040 0.1024131444 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006588_210 0.1029651689 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
19 Hb_002716_060 0.1042088341 - - carboxylesterase np, putative [Ricinus communis]
20 Hb_000107_660 0.1051745808 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_170 Hb_001279_170 Hb_000617_230 Hb_000617_230 Hb_001279_170--Hb_000617_230 Hb_001789_060 Hb_001789_060 Hb_001279_170--Hb_001789_060 Hb_000484_130 Hb_000484_130 Hb_001279_170--Hb_000484_130 Hb_000291_010 Hb_000291_010 Hb_001279_170--Hb_000291_010 Hb_001862_210 Hb_001862_210 Hb_001279_170--Hb_001862_210 Hb_002675_130 Hb_002675_130 Hb_001279_170--Hb_002675_130 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_001878_050 Hb_001878_050 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_000359_040 Hb_000359_040 Hb_001789_060--Hb_000359_040 Hb_001722_120 Hb_001722_120 Hb_001789_060--Hb_001722_120 Hb_004994_010 Hb_004994_010 Hb_001789_060--Hb_004994_010 Hb_001789_060--Hb_000617_230 Hb_002445_100 Hb_002445_100 Hb_001789_060--Hb_002445_100 Hb_022256_020 Hb_022256_020 Hb_000484_130--Hb_022256_020 Hb_001359_050 Hb_001359_050 Hb_000484_130--Hb_001359_050 Hb_003849_110 Hb_003849_110 Hb_000484_130--Hb_003849_110 Hb_012239_020 Hb_012239_020 Hb_000484_130--Hb_012239_020 Hb_001221_110 Hb_001221_110 Hb_000484_130--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_000484_130--Hb_003464_090 Hb_001104_170 Hb_001104_170 Hb_000291_010--Hb_001104_170 Hb_000291_010--Hb_012239_020 Hb_005018_020 Hb_005018_020 Hb_000291_010--Hb_005018_020 Hb_060094_020 Hb_060094_020 Hb_000291_010--Hb_060094_020 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420 Hb_001723_020 Hb_001723_020 Hb_001862_210--Hb_001723_020 Hb_002890_290 Hb_002890_290 Hb_001862_210--Hb_002890_290 Hb_000340_400 Hb_000340_400 Hb_001862_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_001862_210--Hb_142368_010 Hb_004837_180 Hb_004837_180 Hb_001862_210--Hb_004837_180 Hb_000069_380 Hb_000069_380 Hb_001862_210--Hb_000069_380 Hb_002234_090 Hb_002234_090 Hb_002675_130--Hb_002234_090 Hb_002675_130--Hb_022256_020 Hb_004787_050 Hb_004787_050 Hb_002675_130--Hb_004787_050 Hb_001998_240 Hb_001998_240 Hb_002675_130--Hb_001998_240 Hb_004916_010 Hb_004916_010 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2427 74.7416 76.4303 29.9069 35.321 26.4366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2216 46.4808 50.722 64.7319 39.5331

CAGE analysis