Hb_001878_050

Information

Type -
Description -
Location Contig1878: 75643-79751
Sequence    

Annotation

kegg
ID pop:POPTR_0007s15040g
description POPTRDRAFT_871063; hypothetical protein
nr
ID XP_012087274.1
description PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18509: 78051-78974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001878_050 0.0 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
2 Hb_000617_230 0.066550543 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
3 Hb_000402_150 0.0760283075 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
4 Hb_000565_040 0.0762204489 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
5 Hb_003544_060 0.0813846418 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
6 Hb_008114_040 0.0857636986 - - Fanconi anemia group D2 [Gossypium arboreum]
7 Hb_002344_060 0.086836177 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
8 Hb_001009_280 0.0887081156 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
9 Hb_000189_600 0.0905345805 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_000107_660 0.0910043642 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
11 Hb_001789_060 0.0915879225 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
12 Hb_002456_010 0.0922106773 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
13 Hb_002445_100 0.0926974643 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
14 Hb_001279_170 0.092978531 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
15 Hb_000684_510 0.0938989875 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
16 Hb_000077_320 0.093938036 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
17 Hb_050847_050 0.0939540997 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
18 Hb_011618_090 0.0940390239 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
19 Hb_005918_010 0.0952281965 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
20 Hb_004333_040 0.0967642136 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]

Gene co-expression network

sample Hb_001878_050 Hb_001878_050 Hb_000617_230 Hb_000617_230 Hb_001878_050--Hb_000617_230 Hb_000402_150 Hb_000402_150 Hb_001878_050--Hb_000402_150 Hb_000565_040 Hb_000565_040 Hb_001878_050--Hb_000565_040 Hb_003544_060 Hb_003544_060 Hb_001878_050--Hb_003544_060 Hb_008114_040 Hb_008114_040 Hb_001878_050--Hb_008114_040 Hb_002344_060 Hb_002344_060 Hb_001878_050--Hb_002344_060 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_000402_150--Hb_008114_040 Hb_000684_510 Hb_000684_510 Hb_000402_150--Hb_000684_510 Hb_001357_310 Hb_001357_310 Hb_000402_150--Hb_001357_310 Hb_012092_050 Hb_012092_050 Hb_000402_150--Hb_012092_050 Hb_006588_060 Hb_006588_060 Hb_000402_150--Hb_006588_060 Hb_000565_040--Hb_003544_060 Hb_011671_270 Hb_011671_270 Hb_000565_040--Hb_011671_270 Hb_000565_040--Hb_000617_230 Hb_000922_360 Hb_000922_360 Hb_000565_040--Hb_000922_360 Hb_002889_020 Hb_002889_020 Hb_000565_040--Hb_002889_020 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_008114_040--Hb_006588_060 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_008114_040--Hb_000617_230 Hb_000152_660 Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_000441_150 Hb_000441_150 Hb_002344_060--Hb_000441_150 Hb_015175_050 Hb_015175_050 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.519051 0.762737 0.778402 0.450846 0.35295 0.491249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.582018 0.419623 0.492629 1.01165 0.469404

CAGE analysis