Hb_015175_050

Information

Type -
Description -
Location Contig15175: 51954-61061
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27790g
description hypothetical protein
nr
ID XP_012073573.1
description PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
swissprot
ID O22812
description AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2
trembl
ID A0A067KWX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08036 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12895: 51823-61025 , PASA_asmbl_12896: 51823-61025 , PASA_asmbl_12897: 51774-60828 , PASA_asmbl_12901: 56515-56776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_050 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
2 Hb_002344_060 0.0905895464 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
3 Hb_011716_070 0.0910852307 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
4 Hb_000221_250 0.0952807636 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
5 Hb_000441_150 0.1005763695 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_001878_050 0.1072371248 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
7 Hb_000152_660 0.1108589073 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
8 Hb_000015_060 0.11177142 - - PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
9 Hb_007123_030 0.1158421992 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
10 Hb_011674_020 0.1174252459 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
11 Hb_002391_210 0.1182250531 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
12 Hb_002471_290 0.1205340778 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
13 Hb_119530_010 0.120603212 - - -
14 Hb_009079_030 0.1209522716 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
15 Hb_002477_090 0.1216826971 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
16 Hb_000981_030 0.1218338233 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
17 Hb_004324_130 0.1222021875 - - polypyrimidine tract binding protein, putative [Ricinus communis]
18 Hb_001860_030 0.1224347592 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
19 Hb_006788_020 0.1229947748 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
20 Hb_002400_410 0.1232051418 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_015175_050 Hb_015175_050 Hb_002344_060 Hb_002344_060 Hb_015175_050--Hb_002344_060 Hb_011716_070 Hb_011716_070 Hb_015175_050--Hb_011716_070 Hb_000221_250 Hb_000221_250 Hb_015175_050--Hb_000221_250 Hb_000441_150 Hb_000441_150 Hb_015175_050--Hb_000441_150 Hb_001878_050 Hb_001878_050 Hb_015175_050--Hb_001878_050 Hb_000152_660 Hb_000152_660 Hb_015175_050--Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_002344_060--Hb_000441_150 Hb_002344_060--Hb_011716_070 Hb_011716_070--Hb_000221_250 Hb_001860_030 Hb_001860_030 Hb_011716_070--Hb_001860_030 Hb_002400_410 Hb_002400_410 Hb_011716_070--Hb_002400_410 Hb_004324_130 Hb_004324_130 Hb_011716_070--Hb_004324_130 Hb_000020_150 Hb_000020_150 Hb_000221_250--Hb_000020_150 Hb_003097_170 Hb_003097_170 Hb_000221_250--Hb_003097_170 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_000441_150--Hb_000221_250 Hb_010417_080 Hb_010417_080 Hb_000441_150--Hb_010417_080 Hb_000441_150--Hb_000152_660 Hb_002667_060 Hb_002667_060 Hb_000441_150--Hb_002667_060 Hb_000617_230 Hb_000617_230 Hb_001878_050--Hb_000617_230 Hb_000402_150 Hb_000402_150 Hb_001878_050--Hb_000402_150 Hb_000565_040 Hb_000565_040 Hb_001878_050--Hb_000565_040 Hb_003544_060 Hb_003544_060 Hb_001878_050--Hb_003544_060 Hb_008114_040 Hb_008114_040 Hb_001878_050--Hb_008114_040 Hb_001018_050 Hb_001018_050 Hb_000152_660--Hb_001018_050 Hb_000140_480 Hb_000140_480 Hb_000152_660--Hb_000140_480 Hb_001157_090 Hb_001157_090 Hb_000152_660--Hb_001157_090 Hb_000739_100 Hb_000739_100 Hb_000152_660--Hb_000739_100 Hb_002391_210 Hb_002391_210 Hb_000152_660--Hb_002391_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5626 22.4094 15.4673 12.8781 10.539 24.1921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3203 10.2044 13.1785 36.1683 12.2122

CAGE analysis