Hb_011716_070

Information

Type transcription factor
Description TF Family: HRT
Location Contig11716: 55969-58271
Sequence    

Annotation

kegg
ID rcu:RCOM_1047810
description hypothetical protein
nr
ID XP_012076893.1
description PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05314: 55858-71896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_070 0.0 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
2 Hb_000221_250 0.0817438011 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
3 Hb_015175_050 0.0910852307 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
4 Hb_002344_060 0.0949699453 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
5 Hb_001860_030 0.0980742967 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
6 Hb_002400_410 0.0983877557 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
7 Hb_004324_130 0.099847391 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_000907_110 0.1021530442 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
9 Hb_000152_660 0.1026490814 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
10 Hb_001157_090 0.1052504835 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
11 Hb_002217_030 0.1065534183 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
12 Hb_000181_400 0.1076609967 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
13 Hb_000200_120 0.1085352449 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
14 Hb_000441_150 0.1090869975 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000556_120 0.1093062792 - - Spastin, putative [Ricinus communis]
16 Hb_001252_120 0.1093459401 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
17 Hb_039946_050 0.1099185479 - - catalytic, putative [Ricinus communis]
18 Hb_000903_060 0.1100256138 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
19 Hb_007123_030 0.1100721563 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
20 Hb_073973_100 0.1104677649 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_070 Hb_011716_070 Hb_000221_250 Hb_000221_250 Hb_011716_070--Hb_000221_250 Hb_015175_050 Hb_015175_050 Hb_011716_070--Hb_015175_050 Hb_002344_060 Hb_002344_060 Hb_011716_070--Hb_002344_060 Hb_001860_030 Hb_001860_030 Hb_011716_070--Hb_001860_030 Hb_002400_410 Hb_002400_410 Hb_011716_070--Hb_002400_410 Hb_004324_130 Hb_004324_130 Hb_011716_070--Hb_004324_130 Hb_000020_150 Hb_000020_150 Hb_000221_250--Hb_000020_150 Hb_003097_170 Hb_003097_170 Hb_000221_250--Hb_003097_170 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_015175_050--Hb_002344_060 Hb_015175_050--Hb_000221_250 Hb_000441_150 Hb_000441_150 Hb_015175_050--Hb_000441_150 Hb_001878_050 Hb_001878_050 Hb_015175_050--Hb_001878_050 Hb_000152_660 Hb_000152_660 Hb_015175_050--Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_002344_060--Hb_000441_150 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_013399_020 Hb_013399_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04978 5.55314 3.27041 4.35352 4.59954 4.49694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37956 3.05447 3.72995 8.71541 3.07882

CAGE analysis