Hb_009079_030

Information

Type -
Description -
Location Contig9079: 55775-59975
Sequence    

Annotation

kegg
ID rcu:RCOM_1596190
description Transcription initiation factor IIF subunit beta, putative
nr
ID XP_012071957.1
description PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
swissprot
ID O94424
description Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1
trembl
ID E6NU66
description JHL18I08.10 protein OS=Jatropha curcas GN=JHL18I08.10 PE=4 SV=1
Gene Ontology
ID GO:0005674
description transcription initiation factor iif subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62091: 55793-59934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009079_030 0.0 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
2 Hb_003647_130 0.0615648887 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
3 Hb_006198_120 0.0620870347 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
4 Hb_003294_070 0.0625650951 - - hypothetical protein RCOM_1714550 [Ricinus communis]
5 Hb_002471_290 0.0645611563 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
6 Hb_003913_070 0.0717001163 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
7 Hb_001473_180 0.072039138 - - glutathione reductase [Hevea brasiliensis]
8 Hb_001999_310 0.0766607132 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
9 Hb_007380_060 0.0769548652 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
10 Hb_002400_410 0.0781150763 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
11 Hb_000053_040 0.0783588014 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
12 Hb_000614_240 0.0784033721 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
13 Hb_002600_150 0.0784873317 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
14 Hb_005147_030 0.0803514994 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
15 Hb_001301_150 0.0809408171 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
16 Hb_002456_010 0.0812615962 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
17 Hb_000556_120 0.0829814821 - - Spastin, putative [Ricinus communis]
18 Hb_000920_300 0.0830882138 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
19 Hb_009270_020 0.083235389 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
20 Hb_000111_290 0.0839552026 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_009079_030 Hb_009079_030 Hb_003647_130 Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_003294_070 Hb_003294_070 Hb_009079_030--Hb_003294_070 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_001473_180 Hb_001473_180 Hb_009079_030--Hb_001473_180 Hb_001232_010 Hb_001232_010 Hb_003647_130--Hb_001232_010 Hb_000614_240 Hb_000614_240 Hb_003647_130--Hb_000614_240 Hb_003647_130--Hb_001473_180 Hb_003647_130--Hb_003294_070 Hb_017862_020 Hb_017862_020 Hb_003647_130--Hb_017862_020 Hb_000538_160 Hb_000538_160 Hb_006198_120--Hb_000538_160 Hb_003529_170 Hb_003529_170 Hb_006198_120--Hb_003529_170 Hb_006198_120--Hb_003913_070 Hb_005271_190 Hb_005271_190 Hb_006198_120--Hb_005271_190 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_005147_030 Hb_005147_030 Hb_002471_290--Hb_005147_030 Hb_002400_410 Hb_002400_410 Hb_002471_290--Hb_002400_410 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_002471_290--Hb_003647_130 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_002600_150 Hb_002600_150 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.5324 38.8796 29.2378 36.861 35.1494 41.0156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4024 37.2932 32.7043 79.0024 43.3784

CAGE analysis