Hb_002600_150

Information

Type -
Description -
Location Contig2600: 169494-174417
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14230g
description 3-biphosphoglycerate-independent phosphoglycerate mutase family protein
nr
ID XP_012088135.1
description PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
swissprot
ID C3MWY6
description 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=apgM PE=3 SV=1
trembl
ID A0A067JKE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25648 PE=4 SV=1
Gene Ontology
ID GO:0046537
description 3-biphosphoglycerate-independent phosphoglycerate mutase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27106: 169701-173890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_150 0.0 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
2 Hb_000053_040 0.0472786078 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
3 Hb_012733_030 0.0533061931 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
4 Hb_001357_020 0.0544271219 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
5 Hb_000138_100 0.0601889428 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
6 Hb_013726_090 0.0607466017 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
7 Hb_001473_180 0.0638223715 - - glutathione reductase [Hevea brasiliensis]
8 Hb_007380_060 0.0664885718 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
9 Hb_007426_110 0.0670609719 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
10 Hb_004846_220 0.0671297025 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
11 Hb_000011_060 0.0697750019 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
12 Hb_002044_150 0.0697810447 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
13 Hb_001999_310 0.0708789803 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
14 Hb_000592_030 0.0727960563 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_004254_090 0.0730159606 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
16 Hb_000254_090 0.0736968249 - - PREDICTED: la protein 2 [Jatropha curcas]
17 Hb_002263_020 0.0743252664 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_002496_010 0.074900069 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
19 Hb_005357_160 0.0757187041 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
20 Hb_009270_020 0.0761881373 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]

Gene co-expression network

sample Hb_002600_150 Hb_002600_150 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_000053_040--Hb_000138_100 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010 Hb_007380_060 Hb_007380_060 Hb_012733_030--Hb_007380_060 Hb_007426_110 Hb_007426_110 Hb_012733_030--Hb_007426_110 Hb_001442_040 Hb_001442_040 Hb_012733_030--Hb_001442_040 Hb_000008_290 Hb_000008_290 Hb_012733_030--Hb_000008_290 Hb_012733_030--Hb_000053_040 Hb_002518_260 Hb_002518_260 Hb_001357_020--Hb_002518_260 Hb_000388_090 Hb_000388_090 Hb_001357_020--Hb_000388_090 Hb_029510_050 Hb_029510_050 Hb_001357_020--Hb_029510_050 Hb_000976_300 Hb_000976_300 Hb_001357_020--Hb_000976_300 Hb_001008_120 Hb_001008_120 Hb_001357_020--Hb_001008_120 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_013726_090--Hb_000011_060 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_009079_030 Hb_009079_030 Hb_001473_180--Hb_009079_030 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08022 5.17053 5.48507 6.43937 6.02134 8.27655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.41879 5.91572 7.54609 10.8863 10.1059

CAGE analysis