Hb_000011_060

Information

Type -
Description -
Location Contig11: 135309-172314
Sequence    

Annotation

kegg
ID rcu:RCOM_0622010
description Exportin-7, putative
nr
ID XP_012068753.1
description PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZLT0
description Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1
trembl
ID A0A067KWK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24595 PE=4 SV=1
Gene Ontology
ID GO:0005622
description exportin-7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02959: 135379-164144 , PASA_asmbl_02960: 155342-162430 , PASA_asmbl_02961: 144204-144338 , PASA_asmbl_02962: 141600-141766 , PASA_asmbl_02963: 150295-154517 , PASA_asmbl_02965: 170607-171400 , PASA_asmbl_02966: 171652-172136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_060 0.0 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
2 Hb_001876_010 0.0513445058 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
3 Hb_013726_090 0.054067303 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
4 Hb_000614_240 0.0552273781 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_000984_170 0.0606813588 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_010142_020 0.0621875466 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001105_020 0.0624185104 - - expressed protein, putative [Ricinus communis]
8 Hb_002908_050 0.0627494977 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
9 Hb_000537_050 0.0655342711 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
10 Hb_002026_150 0.0660737831 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
11 Hb_000189_550 0.066931459 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
12 Hb_000138_100 0.0671789264 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
13 Hb_019616_020 0.0672320132 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
14 Hb_009296_040 0.0675222811 - - hypothetical protein L484_007435 [Morus notabilis]
15 Hb_001999_310 0.0683700646 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
16 Hb_000352_310 0.0685526877 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
17 Hb_000053_040 0.0689483065 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
18 Hb_005634_010 0.069265271 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_002600_150 0.0697750019 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
20 Hb_000028_390 0.0704350215 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000011_060 Hb_000011_060 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_001876_010--Hb_000984_170 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_000614_240--Hb_001999_310 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000984_170--Hb_002908_050 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_001105_020--Hb_000614_240 Hb_002026_150 Hb_002026_150 Hb_001105_020--Hb_002026_150 Hb_000261_480 Hb_000261_480 Hb_001105_020--Hb_000261_480 Hb_001105_020--Hb_000189_550 Hb_009296_040 Hb_009296_040 Hb_001105_020--Hb_009296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0845 13.0083 10.939 17.0446 10.9363 13.3229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1937 9.28363 16.9114 21.4596 18.2147

CAGE analysis