Hb_006452_120

Information

Type -
Description -
Location Contig6452: 73594-80809
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06970g
description ubiquitin interaction motif-containing family protein
nr
ID XP_012066023.1
description PREDICTED: protein FAM188A [Jatropha curcas]
swissprot
ID Q0IIH8
description Protein FAM188A OS=Bos taurus GN=FAM188A PE=2 SV=1
trembl
ID A0A067LEQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25186 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein fam188a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52307: 73593-80753 , PASA_asmbl_52309: 77056-77216 , PASA_asmbl_52310: 77243-77535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_120 0.0 - - PREDICTED: protein FAM188A [Jatropha curcas]
2 Hb_010515_020 0.0457268037 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
3 Hb_004030_080 0.0564514715 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
4 Hb_000574_450 0.0565369433 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
5 Hb_008748_030 0.0595887546 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000984_170 0.0601907293 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_000012_310 0.062401103 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
8 Hb_012114_100 0.0624114824 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_028487_160 0.0638740637 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_029243_030 0.0684139473 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
11 Hb_005663_110 0.0695656345 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
12 Hb_002989_020 0.0708275949 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
13 Hb_017387_010 0.0709356303 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
14 Hb_000778_010 0.0712434573 - - hypothetical protein [Bacillus subtilis]
15 Hb_000227_160 0.0727669247 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
16 Hb_000487_270 0.0729115679 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
17 Hb_004705_170 0.0730077886 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
18 Hb_003544_030 0.0742673529 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
19 Hb_004677_050 0.0743207922 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
20 Hb_002830_010 0.0744225186 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_120 Hb_006452_120 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_004030_080--Hb_000984_170 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_008748_030--Hb_000012_310 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.50624 11.2027 7.89895 16.2442 6.11571 7.55957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8552 8.13883 9.33619 12.5521 11.038

CAGE analysis