Hb_001500_140

Information

Type -
Description -
Location Contig1500: 166284-173118
Sequence    

Annotation

kegg
ID rcu:RCOM_1437420
description pelota, putative
nr
ID XP_002512614.1
description pelota, putative [Ricinus communis]
swissprot
ID Q9ZT87
description Protein PELOTA 1 OS=Arabidopsis thaliana GN=PEL1 PE=2 SV=1
trembl
ID B9RFU5
description Protein pelota homolog OS=Ricinus communis GN=RCOM_1437420 PE=3 SV=1
Gene Ontology
ID GO:0044424
description protein pelota 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12546: 166409-173017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_140 0.0 - - pelota, putative [Ricinus communis]
2 Hb_001584_120 0.0540516956 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
3 Hb_010142_020 0.0548177016 - - conserved hypothetical protein [Ricinus communis]
4 Hb_093458_040 0.0558153912 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_001999_310 0.0563684527 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
6 Hb_000140_290 0.0580145922 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
7 Hb_000574_450 0.0590305821 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
8 Hb_002989_020 0.0596651417 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
9 Hb_029243_030 0.0603528651 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_001434_080 0.0605538483 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
11 Hb_012498_010 0.0605995347 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
12 Hb_000111_290 0.0619997873 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
13 Hb_011063_050 0.0622923306 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
14 Hb_000981_030 0.0638088515 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_004324_130 0.0643408285 - - polypyrimidine tract binding protein, putative [Ricinus communis]
16 Hb_004567_090 0.0656911815 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
17 Hb_000083_120 0.0662239471 - - transcription factor, putative [Ricinus communis]
18 Hb_000556_120 0.0673331272 - - Spastin, putative [Ricinus communis]
19 Hb_003683_020 0.0681804065 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_011016_050 0.0682232397 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001500_140 Hb_001500_140 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_005634_010 Hb_005634_010 Hb_000140_290--Hb_005634_010 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1821 18.3193 15.372 27.1259 14.067 21.6093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.324 19.941 18.9803 28.0455 18.3011

CAGE analysis