Hb_002989_020

Information

Type -
Description -
Location Contig2989: 49211-56584
Sequence    

Annotation

kegg
ID rcu:RCOM_0255010
description phosphatidylinositol N-acetylglucosaminyltransferase, putative (EC:2.4.1.198)
nr
ID XP_012067075.1
description PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
swissprot
ID Q9QYT7
description Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Mus musculus GN=Pigq PE=2 SV=3
trembl
ID B9SVS0
description Phosphatidylinositol N-acetylglucosaminyltransferase, putative OS=Ricinus communis GN=RCOM_0255010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phosphatidylinositol n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31252: 50455-56755 , PASA_asmbl_31253: 49407-50973 , PASA_asmbl_31255: 52144-52374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002989_020 0.0 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
2 Hb_000340_530 0.0448661506 - - hypothetical protein VITISV_016664 [Vitis vinifera]
3 Hb_011063_050 0.0476355614 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
4 Hb_010142_020 0.0503158482 - - conserved hypothetical protein [Ricinus communis]
5 Hb_093458_040 0.0504221773 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
6 Hb_000477_050 0.0536879945 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
7 Hb_001679_050 0.0545207057 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
8 Hb_002849_130 0.0546751358 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
9 Hb_010515_020 0.0561248635 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
10 Hb_002728_080 0.0575934779 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_004990_010 0.0590907394 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
12 Hb_001500_140 0.0596651417 - - pelota, putative [Ricinus communis]
13 Hb_013399_020 0.0607740695 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
14 Hb_001481_060 0.0615247965 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
15 Hb_004586_220 0.0615557565 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
16 Hb_000976_140 0.0617572135 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
17 Hb_004109_080 0.0623619035 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
18 Hb_002890_130 0.0627856561 - - tip120, putative [Ricinus communis]
19 Hb_029243_030 0.0631024982 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
20 Hb_003683_020 0.0634759806 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002989_020 Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_011063_050 Hb_011063_050 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_000340_530--Hb_011063_050 Hb_000340_530--Hb_093458_040 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_011063_050--Hb_010142_020 Hb_011063_050--Hb_001679_050 Hb_011063_050--Hb_093458_040 Hb_010515_020 Hb_010515_020 Hb_011063_050--Hb_010515_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000120_280 Hb_000120_280 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_004990_010 Hb_004990_010 Hb_001679_050--Hb_004990_010 Hb_008279_040 Hb_008279_040 Hb_001679_050--Hb_008279_040 Hb_000574_450 Hb_000574_450 Hb_001679_050--Hb_000574_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22433 4.4608 4.07763 5.92044 3.91272 4.06465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11706 3.92449 3.87058 5.27911 4.6828

CAGE analysis