Hb_000460_080

Information

Type -
Description -
Location Contig460: 137831-142202
Sequence    

Annotation

kegg
ID rcu:RCOM_0736260
description acyl-coenzyme A binding domain containing, putative
nr
ID XP_002526253.1
description acyl-coenzyme A binding domain containing, putative [Ricinus communis]
swissprot
ID Q9STP8
description Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1
trembl
ID B9SJT4
description Acyl-coenzyme A binding domain containing, putative OS=Ricinus communis GN=RCOM_0736260 PE=4 SV=1
Gene Ontology
ID GO:0000062
description acyl- -binding domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43682: 137766-142105 , PASA_asmbl_43683: 137760-142105
cDNA
(Sanger)
(ID:Location)		 017_H07.ab1: 140315-142103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000460_080 0.0 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
2 Hb_000477_050 0.0626733162 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
3 Hb_002071_070 0.0678050072 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
4 Hb_002728_080 0.0678133196 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000120_280 0.0692104558 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_002989_020 0.0715172055 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
7 Hb_001434_080 0.07537354 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_000088_170 0.0766631647 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
9 Hb_001221_430 0.0772500799 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
10 Hb_000600_060 0.0785064356 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
11 Hb_004109_320 0.0794297932 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_000046_500 0.0798525279 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
13 Hb_000778_010 0.0799617506 - - hypothetical protein [Bacillus subtilis]
14 Hb_012506_030 0.0809036164 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_003544_060 0.0809868153 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
16 Hb_013399_020 0.0812164139 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
17 Hb_000856_040 0.0815241963 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
18 Hb_001114_110 0.0817558454 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
19 Hb_105105_010 0.082076489 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
20 Hb_000107_660 0.082238837 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000460_080 Hb_000460_080 Hb_000477_050 Hb_000477_050 Hb_000460_080--Hb_000477_050 Hb_002071_070 Hb_002071_070 Hb_000460_080--Hb_002071_070 Hb_002728_080 Hb_002728_080 Hb_000460_080--Hb_002728_080 Hb_000120_280 Hb_000120_280 Hb_000460_080--Hb_000120_280 Hb_002989_020 Hb_002989_020 Hb_000460_080--Hb_002989_020 Hb_001434_080 Hb_001434_080 Hb_000460_080--Hb_001434_080 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000477_050--Hb_000120_280 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_002728_080--Hb_002989_020 Hb_007481_010 Hb_007481_010 Hb_002728_080--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_002728_080--Hb_005797_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_000046_500 Hb_000046_500 Hb_002728_080--Hb_000046_500 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_011063_050 Hb_011063_050 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8308 21.9879 22.6319 28.1888 21.154 14.9328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9603 15.0942 18.5824 27.5472 15.3611

CAGE analysis