Hb_012632_010

Information

Type -
Description -
Location Contig12632: 5893-15023
Sequence    

Annotation

kegg
ID rcu:RCOM_0208420
description hypothetical protein
nr
ID XP_012079612.1
description PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14887 PE=4 SV=1
Gene Ontology
ID GO:0005886
description calcium and calcium calmodulin-dependent serine threonine-protein kinase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07964: 6050-15069 , PASA_asmbl_07965: 11716-12063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012632_010 0.0 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
2 Hb_003058_260 0.0503362525 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
3 Hb_002071_070 0.0617122051 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
4 Hb_002890_130 0.0638531547 - - tip120, putative [Ricinus communis]
5 Hb_000856_040 0.0649450879 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
6 Hb_002830_010 0.0668932722 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
7 Hb_004374_110 0.0721140568 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
8 Hb_000181_340 0.0721507568 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_004030_080 0.0722346587 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
10 Hb_000123_180 0.0742561847 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
11 Hb_000028_130 0.0742995424 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
12 Hb_000313_120 0.0756114387 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
13 Hb_062226_070 0.0769825972 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
14 Hb_000174_270 0.0770156093 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
15 Hb_001635_120 0.0774038066 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
16 Hb_004787_050 0.0783512026 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
17 Hb_012539_060 0.0789518872 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
18 Hb_002205_250 0.0807431742 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_105105_010 0.0809622756 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
20 Hb_001377_350 0.0817655199 - - PREDICTED: exportin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_012632_010 Hb_012632_010 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_002890_130 Hb_002890_130 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_002071_070--Hb_002890_130 Hb_002071_070--Hb_002830_010 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_001300_010 Hb_001300_010 Hb_000856_040--Hb_001300_010 Hb_105105_010 Hb_105105_010 Hb_000856_040--Hb_105105_010 Hb_004994_240 Hb_004994_240 Hb_000856_040--Hb_004994_240 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_004030_080 Hb_004030_080 Hb_002830_010--Hb_004030_080 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_006839_010 Hb_006839_010 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57649 17.5011 14.6912 17.3904 11.9557 13.0914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40773 8.84403 19.1836 14.9352 18.0557

CAGE analysis