Hb_010515_020

Information

Type -
Description -
Location Contig10515: 29212-39482
Sequence    

Annotation

kegg
ID rcu:RCOM_1648230
description protein transport protein sec23, putative
nr
ID XP_012078435.1
description PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
swissprot
ID Q4PE39
description Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1
trembl
ID A0A067KL87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13124 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01755: 29134-39341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010515_020 0.0 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
2 Hb_006452_120 0.0457268037 - - PREDICTED: protein FAM188A [Jatropha curcas]
3 Hb_000574_450 0.0541928327 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
4 Hb_002989_020 0.0561248635 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
5 Hb_011063_050 0.0586975637 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
6 Hb_029243_030 0.0602549436 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
7 Hb_002830_010 0.0617120605 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
8 Hb_010142_020 0.0618980464 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000487_270 0.06296201 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
10 Hb_004030_080 0.0638305231 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_000984_170 0.0659191001 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
12 Hb_001789_150 0.0667345305 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
13 Hb_005582_040 0.0678423676 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
14 Hb_008279_040 0.0683970724 - - Rer1 family protein isoform 2 [Theobroma cacao]
15 Hb_000046_500 0.0706008853 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
16 Hb_012114_100 0.0715568167 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_000340_530 0.0724257684 - - hypothetical protein VITISV_016664 [Vitis vinifera]
18 Hb_001679_050 0.072838152 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
19 Hb_002728_080 0.0738392403 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001876_010 0.0748146029 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010515_020 Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_010515_020--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_011063_050--Hb_010142_020 Hb_011063_050--Hb_000340_530 Hb_011063_050--Hb_001679_050 Hb_011063_050--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_029243_030--Hb_001999_310 Hb_029243_030--Hb_001500_140 Hb_027073_020 Hb_027073_020 Hb_029243_030--Hb_027073_020 Hb_029243_030--Hb_002989_020 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_002830_010--Hb_004030_080 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22327 11.5055 8.59012 17.0252 9.02208 8.57325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6044 9.81861 11.2547 12.9443 14.3296

CAGE analysis