Hb_000477_050

Information

Type -
Description -
Location Contig477: 83146-88010
Sequence    

Annotation

kegg
ID cic:CICLE_v10008422mg
description hypothetical protein
nr
ID XP_012078707.1
description PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
swissprot
ID Q9C5U3
description 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=1 SV=1
trembl
ID A0A067KJB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13275 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 26s protease regulatory subunit 8 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44519: 83135-88006
cDNA
(Sanger)
(ID:Location)		 044_H24.ab1: 85360-88006

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_050 0.0 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
2 Hb_002989_020 0.0536879945 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
3 Hb_004109_320 0.059228692 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
4 Hb_001009_320 0.0599131987 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
5 Hb_000120_280 0.060442947 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_000460_080 0.0626733162 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
7 Hb_003528_030 0.0653616191 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
8 Hb_010921_050 0.0658177258 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
9 Hb_000702_090 0.0659677489 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
10 Hb_007248_030 0.0669648473 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
11 Hb_012506_030 0.0673572938 - - AP-2 complex subunit alpha, putative [Ricinus communis]
12 Hb_004586_060 0.0674681131 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
13 Hb_000046_500 0.0688770174 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
14 Hb_000803_270 0.0700518426 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
15 Hb_000313_220 0.0704702482 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_002071_070 0.0708395126 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_183510_020 0.0720812698 - - coated vesicle membrane protein, putative [Ricinus communis]
18 Hb_002849_130 0.0723387121 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
19 Hb_002326_040 0.073075586 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_000409_050 0.0732757778 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_050 Hb_000477_050 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000120_280 Hb_000120_280 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_011063_050 Hb_011063_050 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_007894_150 Hb_007894_150 Hb_004109_320--Hb_007894_150 Hb_000365_230 Hb_000365_230 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000006_010 Hb_000006_010 Hb_001009_320--Hb_000006_010 Hb_000522_170 Hb_000522_170 Hb_001009_320--Hb_000522_170 Hb_001009_320--Hb_000120_280 Hb_015807_050 Hb_015807_050 Hb_001009_320--Hb_015807_050 Hb_000313_220 Hb_000313_220 Hb_001009_320--Hb_000313_220 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_002071_070 Hb_002071_070 Hb_000460_080--Hb_002071_070 Hb_002728_080 Hb_002728_080 Hb_000460_080--Hb_002728_080 Hb_000460_080--Hb_000120_280 Hb_000460_080--Hb_002989_020 Hb_001434_080 Hb_001434_080 Hb_000460_080--Hb_001434_080 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2829 28.223 38.2321 41.7744 29.9531 27.1788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4241 26.1178 25.5701 43.4579 31.3229

CAGE analysis