Hb_011063_050

Information

Type -
Description -
Location Contig11063: 21201-22262
Sequence    

Annotation

kegg
ID rcu:RCOM_0872160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012065351.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
swissprot
ID Q84J71
description Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
trembl
ID A0A067LHS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22361 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g17670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03335: 21021-22031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011063_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
2 Hb_010142_020 0.0392655736 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002989_020 0.0476355614 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
4 Hb_000340_530 0.0483718568 - - hypothetical protein VITISV_016664 [Vitis vinifera]
5 Hb_001679_050 0.0545438948 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
6 Hb_093458_040 0.0561851934 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_010515_020 0.0586975637 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
8 Hb_001500_140 0.0622923306 - - pelota, putative [Ricinus communis]
9 Hb_004109_080 0.064645577 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
10 Hb_000111_290 0.065082584 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_029243_030 0.0655040457 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
12 Hb_003683_020 0.0676316425 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_000574_450 0.0676724014 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
14 Hb_002728_080 0.0679489619 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_001417_030 0.0681702354 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
16 Hb_000258_160 0.0707274677 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004567_090 0.0707626817 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_000140_290 0.0707982014 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
19 Hb_012498_010 0.0709313015 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
20 Hb_000260_350 0.0745938502 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011063_050 Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_011063_050--Hb_010142_020 Hb_002989_020 Hb_002989_020 Hb_011063_050--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_011063_050--Hb_000340_530 Hb_001679_050 Hb_001679_050 Hb_011063_050--Hb_001679_050 Hb_093458_040 Hb_093458_040 Hb_011063_050--Hb_093458_040 Hb_010515_020 Hb_010515_020 Hb_011063_050--Hb_010515_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_002989_020--Hb_000340_530 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_002989_020--Hb_001679_050 Hb_000340_530--Hb_093458_040 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_004990_010 Hb_004990_010 Hb_001679_050--Hb_004990_010 Hb_008279_040 Hb_008279_040 Hb_001679_050--Hb_008279_040 Hb_000574_450 Hb_000574_450 Hb_001679_050--Hb_000574_450 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_006452_120 Hb_006452_120 Hb_010515_020--Hb_006452_120 Hb_010515_020--Hb_000574_450 Hb_010515_020--Hb_002989_020 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64626 3.01247 2.12402 4.10165 2.97417 2.55007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25809 3.03413 3.07646 3.65538 3.26845

CAGE analysis